Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119775955
Identifier: 119775955
GI number: 119775955
Start: 3362978
End: 3363385
Strand: Reverse
Name: 119775955
Synonym: Sama_2823
Alternate gene names: NA
Gene position: 3363385-3362978 (Counterclockwise)
Preceding gene: 119775956
Following gene: 119775947
Centisome position: 78.11
GC content: 53.19
Gene sequence:
>408_bases ATGCGTGTTTTGCCCCTGGCCCTTGCAGCTGCCATTGCTGCTTCTTTCCTCCCTTCACCCGCCATGGCAAATACAGATCC GTTGGTGGCCAGTATTTGTGACTACGTGAAAGCGAACGACAAGAATCGTCTTCGTAAAAAACTCAAGGAAAGCCGAGTAA AACTGCGCAACATCTATTCGGGTGTTAACTGTGATGGTGTGAGCTTGCTGCGTACCGCCATGGGTGCCGGTGCCAACGAT GTAGGTGAGTTTGTTGCCAAGCGTCTGTCCGCCACTGAACTGAGCGCTACTGAGGCCGATGGCATGACCATAGTGACCTG GGCCGAAGCAAATGGTCACGGCGGTAGCCCTATCACGGCTGCTATCAAAGAGCGTCTGTCTGGTGGTGGTGAAGAGTCTG ACGATTAA
Upstream 100 bases:
>100_bases TAAAAAAGTGTTAAATTAATCGCCGTGGTACGTGCCCTAAAAGTAAATTCGAAAATACGATTTTACTGATAAATATAAAA AACAATCCGAGGAGTATGAG
Downstream 100 bases:
>100_bases GTTAGCGCTGTAGTCATAAAAGCCGGGCCATTGCCCGGCTTTTTTTATCCCCCTTATGTACCTCAAGGTATGTGACTCTC AGGCTTAAATTTGCCCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 135
Protein sequence:
>135_residues MRVLPLALAAAIAASFLPSPAMANTDPLVASICDYVKANDKNRLRKKLKESRVKLRNIYSGVNCDGVSLLRTAMGAGAND VGEFVAKRLSATELSATEADGMTIVTWAEANGHGGSPITAAIKERLSGGGEESDD
Sequences:
>Translated_135_residues MRVLPLALAAAIAASFLPSPAMANTDPLVASICDYVKANDKNRLRKKLKESRVKLRNIYSGVNCDGVSLLRTAMGAGAND VGEFVAKRLSATELSATEADGMTIVTWAEANGHGGSPITAAIKERLSGGGEESDD >Mature_135_residues MRVLPLALAAAIAASFLPSPAMANTDPLVASICDYVKANDKNRLRKKLKESRVKLRNIYSGVNCDGVSLLRTAMGAGAND VGEFVAKRLSATELSATEADGMTIVTWAEANGHGGSPITAAIKERLSGGGEESDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14091; Mature: 14091
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVLPLALAAAIAASFLPSPAMANTDPLVASICDYVKANDKNRLRKKLKESRVKLRNIYS CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC GVNCDGVSLLRTAMGAGANDVGEFVAKRLSATELSATEADGMTIVTWAEANGHGGSPITA CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHH AIKERLSGGGEESDD HHHHHHCCCCCCCCC >Mature Secondary Structure MRVLPLALAAAIAASFLPSPAMANTDPLVASICDYVKANDKNRLRKKLKESRVKLRNIYS CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC GVNCDGVSLLRTAMGAGANDVGEFVAKRLSATELSATEADGMTIVTWAEANGHGGSPITA CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHH AIKERLSGGGEESDD HHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA