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The map label for this gene is ydiU [C]

Identifier: 119775887

GI number: 119775887

Start: 3293618

End: 3295111

Strand: Reverse

Name: ydiU [C]

Synonym: Sama_2755

Alternate gene names: 119775887

Gene position: 3295111-3293618 (Counterclockwise)

Preceding gene: 119775888

Following gene: 119775886

Centisome position: 76.52

GC content: 58.77

Gene sequence:

>1494_bases
ATGTCCAAGGTGTTTTCCCCGTTTCAGTTCGATAACAGTTTTGTTCGGTCAATGGAAGGCTTTTTTGAGCCCTGGCAAGG
GGCGAGGGTACCCGCGCCCGCCATGGTGTGCTTTAACCAACAGCTGGCCGATGAGCTGGGGATGGATGCAGATGCCATGG
AAGACAGCCGTCTTGCCGCTTTCTTCTGTGGCATGCTGACCGCCGAAGGCAGTGAGCCCGTGGCCATGGCCTATGCGGGC
CACCAATTTGGTGGTTTTTCACCAAGACTCGGTGATGGCCGGGCCTTGTTGCTGGGGGAGGTAAAAGACATCCATGGACG
ACGTCGGGACCTGCATCTCAAAGGCTCTGGGCGCACCAATTTTTCCCGCGGTGGTGACGGTAAGGCAGTCCTGGGGCCTG
TGCTGCGCGAATATCTGATGGGCGAGGCCATGCATGCCCTGGGTATTCCCACTACCCGGGCCTTGGCGGCGGTGACCACG
GGCGAAGACATTTACCGGGATGGCATCAAGCCTGGCGCTGTGCTGGCACGGGTGGCATCGAGCCATATCCGGGTGGGAAC
CTTTGAGTACGCTGCGGCGCGCGGCGACCATGAAGGCCTGCGTGAACTGGTTAATTACAGCCTGAAACGCCACTATCCAG
AGCTGGAGGACGAGCAAACACCGGCGCTGGCACTCCTCAATTCAGTATCGCGGGCACAGGCAAAGCTGGTGGCCAAATGG
ATGGGGGTCGGCTTTATTCACGGGGTGATGAATACCGATAATGTCACCATTTCCGGTGAAACCATCGACTATGGTCCCTG
TGCCTTTATGGACACTTACGACGCCCGCACCGTGTTCAGCTCTATCGATCACGAGGGCCGTTACGCCTATGGCAATCAGC
CCGGCATTGCCCGCTGGAATCTGGCCCGCTTTGCCGAAGCCCTGTTGCCGCTGCTGGCTGAGGATGAATCCGAGGCGCTC
GCCCATGCACAGACGGTACTGGACGGCTTTGCCGAGGTTTATACCAACGAATGGTTGGCAGTGTTTGCCGCCAAGTTTGG
CCTCAAAACAGCACAGGATGGCGACCTTGAACTCTTTATGGACTTCCTGACCCTGCTTGGCGAGCTGAAACTCGACTTTA
CCCGTTCATTCCGGGCATTGGCAAACAGCCTTGGCGATACAGCTGCGGCGGGGATCGAAGCCTTGACCGCCGACAGTGCC
AGGTTCGCCCCCTGGCTGACCCGCTGGCATGAGAGGCTTGGCCGTGAATATGCCTCTCAATCCGACTTTGCTTCAGATGC
CAGGGCGTTGATGCAGGGCGTGAATCCCGTTTATATCCCCCGCAATCATCTGCTGCAGGGGGCGCTGGACAGCGCCGAAG
CCGGTGATATGGCGCCTTTCGAGCGCTTGCTGGAGGTAGTGTGCCGTCCCTATGAAGAACTGGCGGGCTACGGGGCCTAT
GCTTTGGGCGCTCCGGAGGATTTCGGTCCCTTTCGCACTTTTTGCGGAACCTGA

Upstream 100 bases:

>100_bases
ATTTACCTGGCGTCTGCAAGCGGGTAAATGTGCGCTTTTGCTTATGCTTGCCGGACAAACGGGTTAGCATTAGCCCATTG
AAGTTATGTCGGAGCAGAGG

Downstream 100 bases:

>100_bases
CAGGCGTGAGGGCTTCCTCAGTCAAATGCCGGATTTTGTGGTGTATTTCGCATTTTCGGCCTCAGGTGGTACCATGTGCG
GCGATTTTTGGGAGCGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MSKVFSPFQFDNSFVRSMEGFFEPWQGARVPAPAMVCFNQQLADELGMDADAMEDSRLAAFFCGMLTAEGSEPVAMAYAG
HQFGGFSPRLGDGRALLLGEVKDIHGRRRDLHLKGSGRTNFSRGGDGKAVLGPVLREYLMGEAMHALGIPTTRALAAVTT
GEDIYRDGIKPGAVLARVASSHIRVGTFEYAAARGDHEGLRELVNYSLKRHYPELEDEQTPALALLNSVSRAQAKLVAKW
MGVGFIHGVMNTDNVTISGETIDYGPCAFMDTYDARTVFSSIDHEGRYAYGNQPGIARWNLARFAEALLPLLAEDESEAL
AHAQTVLDGFAEVYTNEWLAVFAAKFGLKTAQDGDLELFMDFLTLLGELKLDFTRSFRALANSLGDTAAAGIEALTADSA
RFAPWLTRWHERLGREYASQSDFASDARALMQGVNPVYIPRNHLLQGALDSAEAGDMAPFERLLEVVCRPYEELAGYGAY
ALGAPEDFGPFRTFCGT

Sequences:

>Translated_497_residues
MSKVFSPFQFDNSFVRSMEGFFEPWQGARVPAPAMVCFNQQLADELGMDADAMEDSRLAAFFCGMLTAEGSEPVAMAYAG
HQFGGFSPRLGDGRALLLGEVKDIHGRRRDLHLKGSGRTNFSRGGDGKAVLGPVLREYLMGEAMHALGIPTTRALAAVTT
GEDIYRDGIKPGAVLARVASSHIRVGTFEYAAARGDHEGLRELVNYSLKRHYPELEDEQTPALALLNSVSRAQAKLVAKW
MGVGFIHGVMNTDNVTISGETIDYGPCAFMDTYDARTVFSSIDHEGRYAYGNQPGIARWNLARFAEALLPLLAEDESEAL
AHAQTVLDGFAEVYTNEWLAVFAAKFGLKTAQDGDLELFMDFLTLLGELKLDFTRSFRALANSLGDTAAAGIEALTADSA
RFAPWLTRWHERLGREYASQSDFASDARALMQGVNPVYIPRNHLLQGALDSAEAGDMAPFERLLEVVCRPYEELAGYGAY
ALGAPEDFGPFRTFCGT
>Mature_496_residues
SKVFSPFQFDNSFVRSMEGFFEPWQGARVPAPAMVCFNQQLADELGMDADAMEDSRLAAFFCGMLTAEGSEPVAMAYAGH
QFGGFSPRLGDGRALLLGEVKDIHGRRRDLHLKGSGRTNFSRGGDGKAVLGPVLREYLMGEAMHALGIPTTRALAAVTTG
EDIYRDGIKPGAVLARVASSHIRVGTFEYAAARGDHEGLRELVNYSLKRHYPELEDEQTPALALLNSVSRAQAKLVAKWM
GVGFIHGVMNTDNVTISGETIDYGPCAFMDTYDARTVFSSIDHEGRYAYGNQPGIARWNLARFAEALLPLLAEDESEALA
HAQTVLDGFAEVYTNEWLAVFAAKFGLKTAQDGDLELFMDFLTLLGELKLDFTRSFRALANSLGDTAAAGIEALTADSAR
FAPWLTRWHERLGREYASQSDFASDARALMQGVNPVYIPRNHLLQGALDSAEAGDMAPFERLLEVVCRPYEELAGYGAYA
LGAPEDFGPFRTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=346, Percent_Identity=40.1734104046243, Blast_Score=229, Evalue=4e-60,
Organism=Escherichia coli, GI1787999, Length=439, Percent_Identity=39.1799544419134, Blast_Score=312, Evalue=3e-86,
Organism=Saccharomyces cerevisiae, GI6325034, Length=398, Percent_Identity=31.9095477386935, Blast_Score=176, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54280; Mature: 54149

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00539 PYROKININ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVFSPFQFDNSFVRSMEGFFEPWQGARVPAPAMVCFNQQLADELGMDADAMEDSRLAA
CCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHH
FFCGMLTAEGSEPVAMAYAGHQFGGFSPRLGDGRALLLGEVKDIHGRRRDLHLKGSGRTN
HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECHHHHCCCCCEEEEECCCCCC
FSRGGDGKAVLGPVLREYLMGEAMHALGIPTTRALAAVTTGEDIYRDGIKPGAVLARVAS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCHHHHHCCCCHHHHHHHHHH
SHIRVGTFEYAAARGDHEGLRELVNYSLKRHYPELEDEQTPALALLNSVSRAQAKLVAKW
CCEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
MGVGFIHGVMNTDNVTISGETIDYGPCAFMDTYDARTVFSSIDHEGRYAYGNQPGIARWN
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCHHH
LARFAEALLPLLAEDESEALAHAQTVLDGFAEVYTNEWLAVFAAKFGLKTAQDGDLELFM
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
DFLTLLGELKLDFTRSFRALANSLGDTAAAGIEALTADSARFAPWLTRWHERLGREYASQ
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
SDFASDARALMQGVNPVYIPRNHLLQGALDSAEAGDMAPFERLLEVVCRPYEELAGYGAY
CHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCE
ALGAPEDFGPFRTFCGT
ECCCCCCCCCHHHHCCC
>Mature Secondary Structure 
SKVFSPFQFDNSFVRSMEGFFEPWQGARVPAPAMVCFNQQLADELGMDADAMEDSRLAA
CCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCHHHHHH
FFCGMLTAEGSEPVAMAYAGHQFGGFSPRLGDGRALLLGEVKDIHGRRRDLHLKGSGRTN
HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECHHHHCCCCCEEEEECCCCCC
FSRGGDGKAVLGPVLREYLMGEAMHALGIPTTRALAAVTTGEDIYRDGIKPGAVLARVAS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCHHHHHCCCCHHHHHHHHHH
SHIRVGTFEYAAARGDHEGLRELVNYSLKRHYPELEDEQTPALALLNSVSRAQAKLVAKW
CCEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
MGVGFIHGVMNTDNVTISGETIDYGPCAFMDTYDARTVFSSIDHEGRYAYGNQPGIARWN
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCHHH
LARFAEALLPLLAEDESEALAHAQTVLDGFAEVYTNEWLAVFAAKFGLKTAQDGDLELFM
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
DFLTLLGELKLDFTRSFRALANSLGDTAAAGIEALTADSARFAPWLTRWHERLGREYASQ
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
SDFASDARALMQGVNPVYIPRNHLLQGALDSAEAGDMAPFERLLEVVCRPYEELAGYGAY
CHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCE
ALGAPEDFGPFRTFCGT
ECCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA