| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774663
Identifier: 119774663
GI number: 119774663
Start: 1856248
End: 1856838
Strand: Direct
Name: 119774663
Synonym: Sama_1526
Alternate gene names: NA
Gene position: 1856248-1856838 (Clockwise)
Preceding gene: 119774662
Following gene: 119774669
Centisome position: 43.11
GC content: 55.16
Gene sequence:
>591_bases ATGCCTTTACCCCTTCTCTGGATTGGTGGCGCCGCACTCGGTGCGCTGGCCATGGCTGATGCCCGGGAATCACGTCGACG CTTGCAGTATCAACGTGCCCGTGGTCTGACGGCTGTCGACCATGGTGACAAATCTGTGGTGCTGTCGCCCAGCACCTGGC AAACCGGTGGCAAGCAAAGCACGCCGCTGCCAGGCGCTTTGATGTGTTGTCATGTGTTTGGCGTGATTGAACATACAGGT ATCTACCTTGGTGATGGTTTGATTGCAGAGCTGCACGGCAGCGGTCTTATCCGTGCTGTATCGGCAGAGCGATTTCTCCA TGGGCGCACCGGCAGCCGCATTTTTGTCGCGGCTGACGCCAACCATCAGGCACTGGCGCACGAAATGGCCACGGAAAGAG CCGCCATGTCACTGTTTCAGTATCGTGATTACGATCTGTTGGAAAACAACTGCCATCGATTTGTATGGCATTGCATCAGC GGCGATGACAGAGAAATCAAGGGCTTTGGCGAGCTGAACCAATTGGTGGCATCTTTTTATGGCAAAGCCATCTATTGGGA CGAGGCCAGGCTGTCTTATCCACGGGAATGA
Upstream 100 bases:
>100_bases CACCCTCTGCGACTAGTCATATTCATTTACAGATTTTCATTCTGTTTTCAGGTGCTTTGGTTCTACTCTTCAGTGAATGT CCATTCCTTTGGGAACGCTT
Downstream 100 bases:
>100_bases GTTGTTCATGGTGGATATCACGAGGTGCTTGCCAGCTAACAGCCCCCAAGATGGGTTATAGGATGCCAGCTTTATCCGCA GTGGGGGATTAGGCTCCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MPLPLLWIGGAALGALAMADARESRRRLQYQRARGLTAVDHGDKSVVLSPSTWQTGGKQSTPLPGALMCCHVFGVIEHTG IYLGDGLIAELHGSGLIRAVSAERFLHGRTGSRIFVAADANHQALAHEMATERAAMSLFQYRDYDLLENNCHRFVWHCIS GDDREIKGFGELNQLVASFYGKAIYWDEARLSYPRE
Sequences:
>Translated_196_residues MPLPLLWIGGAALGALAMADARESRRRLQYQRARGLTAVDHGDKSVVLSPSTWQTGGKQSTPLPGALMCCHVFGVIEHTG IYLGDGLIAELHGSGLIRAVSAERFLHGRTGSRIFVAADANHQALAHEMATERAAMSLFQYRDYDLLENNCHRFVWHCIS GDDREIKGFGELNQLVASFYGKAIYWDEARLSYPRE >Mature_195_residues PLPLLWIGGAALGALAMADARESRRRLQYQRARGLTAVDHGDKSVVLSPSTWQTGGKQSTPLPGALMCCHVFGVIEHTGI YLGDGLIAELHGSGLIRAVSAERFLHGRTGSRIFVAADANHQALAHEMATERAAMSLFQYRDYDLLENNCHRFVWHCISG DDREIKGFGELNQLVASFYGKAIYWDEARLSYPRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21686; Mature: 21555
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLPLLWIGGAALGALAMADARESRRRLQYQRARGLTAVDHGDKSVVLSPSTWQTGGKQS CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCC TPLPGALMCCHVFGVIEHTGIYLGDGLIAELHGSGLIRAVSAERFLHGRTGSRIFVAADA CCCCHHHHHHHHHHHHHHCCEEECCCEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEECC NHQALAHEMATERAAMSLFQYRDYDLLENNCHRFVWHCISGDDREIKGFGELNQLVASFY CHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHEEEEEECCCCCCCCCCHHHHHHHHHHHC GKAIYWDEARLSYPRE CCEEEECCCCCCCCCC >Mature Secondary Structure PLPLLWIGGAALGALAMADARESRRRLQYQRARGLTAVDHGDKSVVLSPSTWQTGGKQS CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCC TPLPGALMCCHVFGVIEHTGIYLGDGLIAELHGSGLIRAVSAERFLHGRTGSRIFVAADA CCCCHHHHHHHHHHHHHHCCEEECCCEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEECC NHQALAHEMATERAAMSLFQYRDYDLLENNCHRFVWHCISGDDREIKGFGELNQLVASFY CHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHEEEEEECCCCCCCCCCHHHHHHHHHHHC GKAIYWDEARLSYPRE CCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA