| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774661
Identifier: 119774661
GI number: 119774661
Start: 1853621
End: 1855477
Strand: Direct
Name: 119774661
Synonym: Sama_1524
Alternate gene names: NA
Gene position: 1853621-1855477 (Clockwise)
Preceding gene: 119774660
Following gene: 119774662
Centisome position: 43.05
GC content: 54.23
Gene sequence:
>1857_bases ATGATTTGTATGGATGCCAGCGAAATTCAGCCCCTAACCCAGTTTCTCAGGCAATTGGTCCCTTTTGACTCTCTTTCGGA TGCTTCTTTGCTGGCCTGTGTGCGGCATCTGAGTGTGGCTTACTACAGTAAATCCATGGGCCATGTTCCCCTTGATGAAT CCCATCCAAGGCTCTACATAGTGCGTAGCGGTGCTTTTGAAGTGCGTGATGAAGAGGGGGAGCTGGTTGACCGCCTGGGG GAAGGGGATTTCTTTGGTTTCCCGTCTTTGCTCAGTGGTGAGGCGATTTCCAATAAGGTGGCCATTCTCGAAGATGGTCT GGTGTATCAACTCAGTCCAGATATGTTCAACAGCTTACGGCAGGAAAGCCGTGAATTTGACCGCTTTTTTAACCGTGCTT TTGCCAAAAGGCTGCGCCATCAGGGCAGATTCAAGGCCAAGGAACTCACCACCACGAGCCGCATCAGCTCACTGATGACG GGTTCGCCGCTCACCATAGATTGCAACCACAGCATACGTCAGGCGGCGGTGATGATGCGGGACGCTCGGGTGTCGTCGCT GCTGGTGACAGACCATCACAAACTCTGCGGCATTCTTACTGACAGAGACTTGCGTAACCGGGTGCTCGCCGAAGGTTTTG ACGGCACACTGCCGGTGCATCAGGCCATGACCCGAAACCCGGTGACCATAGGGGCTGGGGCCTTGGTATTTGAGGCCATG CTCGCCATGAGCGAGCGCAATATCCATCATTTGCCTGTGCTCGAAGGGGACACGCCGGTGGGGGTGATATCCAGCACCGA CATTCTGCGAAGTCAGGGCTCGCAACCGTTAATGCTGATTGGCGAAATAGAGCGTCAAAAGGATGTGGCCAGTTTGATTT CAGTCAGCAAAAAAATCCCTGAACTGCTTCAAAGCCTTATCAGTGCCGATGCCAGAGCCGAAGAAATTGGCCGGGTGTTG ACGTCGGTGACAGACGCCCTGACCAGAAGGCTGATATTACTGAATCAGCAGATTTTGGGGCAGGCGCCCATGGCATTTTG CTGGCTCGCATTTGGCTCCCAGGGGCGCCAGGATCAGGCCGCCTGCTCAGACCAGGATAATGGGTTGCTGCTTGCTGGTG AGCCTGACGAGCATGCCGCCGGCTATTTTGAGGCGCTGAGCCGCGCCGTTTGCAGTGGGCTTGATGAGTGCGGATACCGT TTTTGTCCGGGCGATATCATGGCGCAAAATCCCAAATGGCGCATGTCACTGGCACGCTGGCAACAGGTGTTTGACAACTG GGTTAAGGCGCCTGAGCCCAAGGCCTTGATGCACGCCTCGATATTTTTCGATATGCGGCCCGTGTTTGGTCCTCAAAGCC TGTTCGATGCGCTGCAGGACAAGGTGCTTGCCGGAACTAGGGACAATGACATTTTTCTCGCCGGCATGGCGGGTAACAGC CTTACCGAGGCACCGCCCCTGGGGTTCTTTCGCAAGTTTGTACTTGAGCGGGACGGCTCCGAGGTAAAAGGCATAGATTT AAAGCACAAAGGCAATGCTCTGATTAATGACATTGCCCGTGTATATGCGTTGTCAGCCGGCATCAAGGAGGTGAATACCG CCAAGCGTATTCGCGCCCTGATGGAGCTGGGTGTGATTGGCCGCAAAGATGCGCTTAATCTCGCCGATGCCCACGAATTT ATTGCCCATATGCGTCTTGCCAATCAGGGCGTGCAACACCGACAAGGTCAGGAAATCAGTAACTACCTCAAGCCACAGCA GCTGTCTTCTCTGGTTCGCCACCAACTGCGGGATGCATTCAAAGTTGTGCATGATGCCCAGTCGGGGCTCAGGCTTAAAT TTATGCGGAGCTTTTAA
Upstream 100 bases:
>100_bases GTTTTTCTTTATGGATGCAGGATTTTACTTAGGTCGAATGGTGACATTGAACGCGGCTGCCTTATAGTGGATGCACAAGG CGTAAATTTGCACTAAGCGG
Downstream 100 bases:
>100_bases TGGTTTCCCGGGCTTTTTTACGCCCGCGCCTGTGGTGGCGCAGCCGTACTCTTGACGATGGTCTTGCCCGCACCCTGGTA GACAGCCAGAGAGCACTGCT
Product: CBS domain-containing protein
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein With CBS Domains; Signal Transduction Protein; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; Signal Protein; CBS Domain Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; Cyclic-Nucleotide Signal Transduction Protein; DNA Polymerase III Subunit Epsilon; Multidomain-Containing Protein; CBS Signal-Transduction Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Methyl-Accepting Chemotaxis Protein A; Nucleotidyltransferases
Number of amino acids: Translated: 618; Mature: 618
Protein sequence:
>618_residues MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYIVRSGAFEVRDEEGELVDRLG EGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLRQESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMT GSPLTIDCNHSIRQAAVMMRDARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIPELLQSLISADARAEEIGRVL TSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQAACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYR FCPGDIMAQNPKWRMSLARWQQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMELGVIGRKDALNLADAHEF IAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAFKVVHDAQSGLRLKFMRSF
Sequences:
>Translated_618_residues MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYIVRSGAFEVRDEEGELVDRLG EGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLRQESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMT GSPLTIDCNHSIRQAAVMMRDARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIPELLQSLISADARAEEIGRVL TSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQAACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYR FCPGDIMAQNPKWRMSLARWQQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMELGVIGRKDALNLADAHEF IAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAFKVVHDAQSGLRLKFMRSF >Mature_618_residues MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYIVRSGAFEVRDEEGELVDRLG EGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLRQESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMT GSPLTIDCNHSIRQAAVMMRDARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIPELLQSLISADARAEEIGRVL TSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQAACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYR FCPGDIMAQNPKWRMSLARWQQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMELGVIGRKDALNLADAHEF IAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAFKVVHDAQSGLRLKFMRSF
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68673; Mature: 68673
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYI CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE VRSGAFEVRDEEGELVDRLGEGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLR EECCCEEEECCCHHHHHHCCCCCCCCCCHHHCCCHHCCCEEEEECCEEEEECHHHHHHHH QESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMTGSPLTIDCNHSIRQAAVMMR HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH DARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM HHHHHHHHEECCHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCCEECHHHHHHHHH LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIP HHHHCCCCCCCCEECCCCCCEEECCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHH ELLQSLISADARAEEIGRVLTSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH ACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYRFCPGDIMAQNPKWRMSLARW CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCEECCCHHHCCCCHHHHHHHHH QQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRAL CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH MELGVIGRKDALNLADAHEFIAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAF HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHCCHHHHHHHHHHHHHHHH KVVHDAQSGLRLKFMRSF HHHHHHHCCCEEHHHHCC >Mature Secondary Structure MICMDASEIQPLTQFLRQLVPFDSLSDASLLACVRHLSVAYYSKSMGHVPLDESHPRLYI CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE VRSGAFEVRDEEGELVDRLGEGDFFGFPSLLSGEAISNKVAILEDGLVYQLSPDMFNSLR EECCCEEEECCCHHHHHHCCCCCCCCCCHHHCCCHHCCCEEEEECCEEEEECHHHHHHHH QESREFDRFFNRAFAKRLRHQGRFKAKELTTTSRISSLMTGSPLTIDCNHSIRQAAVMMR HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH DARVSSLLVTDHHKLCGILTDRDLRNRVLAEGFDGTLPVHQAMTRNPVTIGAGALVFEAM HHHHHHHHEECCHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHCCCCCEECHHHHHHHHH LAMSERNIHHLPVLEGDTPVGVISSTDILRSQGSQPLMLIGEIERQKDVASLISVSKKIP HHHHCCCCCCCCEECCCCCCEEECCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHH ELLQSLISADARAEEIGRVLTSVTDALTRRLILLNQQILGQAPMAFCWLAFGSQGRQDQA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH ACSDQDNGLLLAGEPDEHAAGYFEALSRAVCSGLDECGYRFCPGDIMAQNPKWRMSLARW CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHCCCEECCCHHHCCCCHHHHHHHHH QQVFDNWVKAPEPKALMHASIFFDMRPVFGPQSLFDALQDKVLAGTRDNDIFLAGMAGNS HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC LTEAPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRAL CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH MELGVIGRKDALNLADAHEFIAHMRLANQGVQHRQGQEISNYLKPQQLSSLVRHQLRDAF HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHCCHHHHHHHHHHHHHHHH KVVHDAQSGLRLKFMRSF HHHHHHHCCCEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA