Click here to switch to the map view.

The map label for this gene is rnk [H]

Identifier: 119774570

GI number: 119774570

Start: 1744664

End: 1745074

Strand: Direct

Name: rnk [H]

Synonym: Sama_1433

Alternate gene names: 119774570

Gene position: 1744664-1745074 (Clockwise)

Preceding gene: 119774569

Following gene: 119774572

Centisome position: 40.52

GC content: 56.45

Gene sequence:

>411_bases
GTGACTGAACAACCCAAGATTGTGATCTCCGAAATTGATATGGAGCGTCTTGAACGATTATTGGAAAGCCTGCCGGGGAA
TGATGCCGGCAAGGTGGCATTGGAAGCTGAACTCAGCCGCGCTGAGGTCAGACCGTCCAAGGATATGCCAGCCAATGTGG
TGACCATGAATTCCGAGGTACGCTTTACCGTGTCATCCTCGGCAGAAGAATTTTGCCTGAGGCTGGTATACCCAAAAGAT
GTGTCGGCCAAGGGGGACACAGTCTCCATCCTCGCGCCGGTCGGCAGTGCTCTGCTGGGACTGGCCCAGGGGGATGAGAT
GGACTGGCCCCGTCCCGGTGGCGGTACCACCCGGGTCAGAATCGAAGAAGTGACTTATCAGCCTGAGCGCAGTGGTGACT
TTCACCGCTGA

Upstream 100 bases:

>100_bases
GGACTATTTGGTGCGCTAAACCCTCCGTGGGGGAAGGGATAACGCGATTGTTGGGCGCCGCCCAATAGGGTGGCCTTGTT
TAAGAAAGTAGAGGACTGCT

Downstream 100 bases:

>100_bases
GTAGTCCGCGCATTAAGCCGCGCTTCAGGATAAAGCAATAAAAAAACCAGCGCTGGAGCGCTGGTTTTTTATTAGGGAAA
ACAGCGATTACTCGTCGCCG

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MTEQPKIVISEIDMERLERLLESLPGNDAGKVALEAELSRAEVRPSKDMPANVVTMNSEVRFTVSSSAEEFCLRLVYPKD
VSAKGDTVSILAPVGSALLGLAQGDEMDWPRPGGGTTRVRIEEVTYQPERSGDFHR

Sequences:

>Translated_136_residues
MTEQPKIVISEIDMERLERLLESLPGNDAGKVALEAELSRAEVRPSKDMPANVVTMNSEVRFTVSSSAEEFCLRLVYPKD
VSAKGDTVSILAPVGSALLGLAQGDEMDWPRPGGGTTRVRIEEVTYQPERSGDFHR
>Mature_135_residues
TEQPKIVISEIDMERLERLLESLPGNDAGKVALEAELSRAEVRPSKDMPANVVTMNSEVRFTVSSSAEEFCLRLVYPKDV
SAKGDTVSILAPVGSALLGLAQGDEMDWPRPGGGTTRVRIEEVTYQPERSGDFHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=136, Percent_Identity=43.3823529411765, Blast_Score=107, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14932; Mature: 14801

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQPKIVISEIDMERLERLLESLPGNDAGKVALEAELSRAEVRPSKDMPANVVTMNSEV
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCCCEEEEECCEE
RFTVSSSAEEFCLRLVYPKDVSAKGDTVSILAPVGSALLGLAQGDEMDWPRPGGGTTRVR
EEEECCCHHHEEEEEECCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCEEEE
IEEVTYQPERSGDFHR
EEEEEECCCCCCCCCC
>Mature Secondary Structure 
TEQPKIVISEIDMERLERLLESLPGNDAGKVALEAELSRAEVRPSKDMPANVVTMNSEV
CCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCCCEEEEECCEE
RFTVSSSAEEFCLRLVYPKDVSAKGDTVSILAPVGSALLGLAQGDEMDWPRPGGGTTRVR
EEEECCCHHHEEEEEECCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCEEEE
IEEVTYQPERSGDFHR
EEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]