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The map label for this gene is raiA [H]

Identifier: 119774036

GI number: 119774036

Start: 1088371

End: 1088727

Strand: Reverse

Name: raiA [H]

Synonym: Sama_0899

Alternate gene names: 119774036

Gene position: 1088727-1088371 (Counterclockwise)

Preceding gene: 119774038

Following gene: 119774035

Centisome position: 25.28

GC content: 48.74

Gene sequence:

>357_bases
ATGTTGAAAATCACCAGCAAACAGTTCGAAGTAACTACTCCTATCCGTGAACGCGTTGAAAGCCGCTTTGAAAAGCTCGC
TCGTCACGATGTTCCGCTGATCAATCCACATATCATTATCAGCCAGGAGAAAACCCTCTTTAAAATCGAAGCCTCTGTTG
GGGTACCACAAGGAGATTTATTTGCCCAGGCGAAAAGTGAAAACCTGTATGCAGCCATTACGGCCATGGGACAAAAGCTG
GAGAAACAGCTCAATCGCCTGACCCACAAACCCGAAGCCAAACGTGCCGATACCCAAGCGGTAGCCGCCGAGGAAGTTGA
CTTCGAAGACGACTATGAGGAGGAATACGCAGCTTGA

Upstream 100 bases:

>100_bases
GAACGATATTTCCGCCTTGATAAAACGTGATTTTACTCACGACTTTCAGAATTCAGCTTGGTAGTCTGGAGTCACGGAAA
CAAAAAAGAGGCTCGACAAT

Downstream 100 bases:

>100_bases
CCCCGTTCAATAACACGACAAAGCGCACCTCCGGGTGCGCTTTATTTTGTACAACATATGCAGATTTTTTGATTGACACT
CAAGGGCGCAGTCTTTAGTT

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MLKITSKQFEVTTPIRERVESRFEKLARHDVPLINPHIIISQEKTLFKIEASVGVPQGDLFAQAKSENLYAAITAMGQKL
EKQLNRLTHKPEAKRADTQAVAAEEVDFEDDYEEEYAA

Sequences:

>Translated_118_residues
MLKITSKQFEVTTPIRERVESRFEKLARHDVPLINPHIIISQEKTLFKIEASVGVPQGDLFAQAKSENLYAAITAMGQKL
EKQLNRLTHKPEAKRADTQAVAAEEVDFEDDYEEEYAA
>Mature_118_residues
MLKITSKQFEVTTPIRERVESRFEKLARHDVPLINPHIIISQEKTLFKIEASVGVPQGDLFAQAKSENLYAAITAMGQKL
EKQLNRLTHKPEAKRADTQAVAAEEVDFEDDYEEEYAA

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=114, Percent_Identity=44.7368421052632, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13415; Mature: 13415

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKITSKQFEVTTPIRERVESRFEKLARHDVPLINPHIIISQEKTLFKIEASVGVPQGDL
CCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCHH
FAQAKSENLYAAITAMGQKLEKQLNRLTHKPEAKRADTQAVAAEEVDFEDDYEEEYAA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHCC
>Mature Secondary Structure
MLKITSKQFEVTTPIRERVESRFEKLARHDVPLINPHIIISQEKTLFKIEASVGVPQGDL
CCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCHH
FAQAKSENLYAAITAMGQKLEKQLNRLTHKPEAKRADTQAVAAEEVDFEDDYEEEYAA
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]