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The map label for this gene is 119774038

Identifier: 119774038

GI number: 119774038

Start: 1089750

End: 1090193

Strand: Reverse

Name: 119774038

Synonym: Sama_0901

Alternate gene names: NA

Gene position: 1090193-1089750 (Counterclockwise)

Preceding gene: 119774040

Following gene: 119774036

Centisome position: 25.32

GC content: 51.58

Gene sequence:

>444_bases
ATGAAAAAGACATTGCTTTGCCTGAGCGCCCTGCTGGCTTTTGGTGCCAGCGCCAACAACTTTGAATCTGCCGATGACGC
CATTCACTATCGCCAGTCAGCCTTCGGTTTGATTGCTTATCAGTTTGGTGACATGAGCGCCATGCTCAAAGGTAAGAAGG
AATTCAATGCCGACGTGTTTGCCAAGCGCGCCGAAAACGTAGCGGCCCTCTCCAAGTTGCCTGCAGAAGGTTTTATCGCC
GGCTCTGACAAAGGCAACACCGACGCCCTGGGCAAAATCTGGGAAAACCAGGCGGACTTTGACAGCCGTATGAGTGAGTT
CCAGGAAAATGCCGCCAAATTGGCCGTGGCTGCCAAAGGCACCGACAAAGATGCCATCAAGTCGGCATTTATGAATACCG
GCAAGAGCTGTAAAGGCTGCCACGACAACTACAAAAAAGACTAA

Upstream 100 bases:

>100_bases
CAAACAAAATTTAACAAAATGCGTCATTTAGTTTGTGCGACTTCCGGTTACAATGACTGTCTTTGCGTCTTACCCATTCA
CTCCACAAGGAAGAATAACA

Downstream 100 bases:

>100_bases
GCTTCTGTTGTCTGATAAAAAAGCCTGCATCTGCAGGCTTTTTTATTATTTCAGTATCACCCGTTACAGTGCCTGAATGG
CTGGCCACAGCAATAAATAG

Product: cytochrome c, class II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MKKTLLCLSALLAFGASANNFESADDAIHYRQSAFGLIAYQFGDMSAMLKGKKEFNADVFAKRAENVAALSKLPAEGFIA
GSDKGNTDALGKIWENQADFDSRMSEFQENAAKLAVAAKGTDKDAIKSAFMNTGKSCKGCHDNYKKD

Sequences:

>Translated_147_residues
MKKTLLCLSALLAFGASANNFESADDAIHYRQSAFGLIAYQFGDMSAMLKGKKEFNADVFAKRAENVAALSKLPAEGFIA
GSDKGNTDALGKIWENQADFDSRMSEFQENAAKLAVAAKGTDKDAIKSAFMNTGKSCKGCHDNYKKD
>Mature_147_residues
MKKTLLCLSALLAFGASANNFESADDAIHYRQSAFGLIAYQFGDMSAMLKGKKEFNADVFAKRAENVAALSKLPAEGFIA
GSDKGNTDALGKIWENQADFDSRMSEFQENAAKLAVAAKGTDKDAIKSAFMNTGKSCKGCHDNYKKD

Specific function: Cytochrome c' is the most widely occurring bacterial c- type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 15849; Mature: 15849

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLCLSALLAFGASANNFESADDAIHYRQSAFGLIAYQFGDMSAMLKGKKEFNADVF
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHCCHHHH
AKRAENVAALSKLPAEGFIAGSDKGNTDALGKIWENQADFDSRMSEFQENAAKLAVAAKG
HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
TDKDAIKSAFMNTGKSCKGCHDNYKKD
CCHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKTLLCLSALLAFGASANNFESADDAIHYRQSAFGLIAYQFGDMSAMLKGKKEFNADVF
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHCCHHHH
AKRAENVAALSKLPAEGFIAGSDKGNTDALGKIWENQADFDSRMSEFQENAAKLAVAAKG
HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
TDKDAIKSAFMNTGKSCKGCHDNYKKD
CCHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6273892; 2829828 [H]