Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773727

Identifier: 119773727

GI number: 119773727

Start: 734874

End: 736049

Strand: Reverse

Name: 119773727

Synonym: Sama_0589

Alternate gene names: NA

Gene position: 736049-734874 (Counterclockwise)

Preceding gene: 119773728

Following gene: 119773726

Centisome position: 17.09

GC content: 52.72

Gene sequence:

>1176_bases
ATGATGAAAAAGACTCTGATCGCCAGCGCTCTGCTGGGTCTGTTCGCCAGCCAAACTGCCATGGCCTCTGACGAAACCGC
CGAACTGCGTAAAATCATTGAACAGCAGCAGCAGGTTCTGAAAGATCTGGAAAAACGCCTGGAAGAGACTGAAAAGCGCG
TTGAGCAAACTGCCGATGCCACCGAAGCCAATGCCAGTGCCAAGAGCGCCACCACCATCGGCGGCTACGGTGAACTGCAC
TACAACAACATCGACAACAATGCAGACAGCAGCAAAGACAAGACCGAAATGGACTTCCACCGTTTCGTACTGTTCTTTGG
CCATGAATTCACCAATAAGACCCGTTTTTTCTCTGAGCTGGAACTGGAACACTCTCTGGCCGGCGAAGGCAAGAAAGGTG
AAGTTGAGCTGGAGCAGGCTTACATCGAGCACGACTTCACCGACGCTATCACAGCTAAGGCCGGTTTGTTCCTGATGCCA
GTGGGTATCATCAACGAAACCCACGAACCCAACACCTTCTACGGTGTTGAACGTAATCCTGTTGAGTCAAACATAGTACC
CAGCACCTGGTGGGAAGGCGGTCTGGCCGTCAATCTGAAAGCTGCACCAGGTCTGGCATTTGATGCCGCTATCACTTCCG
GCCTCAAGGTTAAAGATGATTACAACGTACGCAGTGGTCGTCAAAAGGTGTCCAACGCCAATGCTGATGCCCTGGCTTAC
ACCGGTCGCGTGAAGTACACCGGCATTGCCGGACTTGAGCTGGCTGCAAGTGCCCAGTATCAAAGTGACCTGACCCAGGG
TAAAGATGGCGTAGACGAAGCCTCTGCCACACTGCTTGAAGCCCACGGTATCTACAGCATCGGTGGATTTACCATCAAAG
CACTTTATGCCCAGTGGAACATTGACGGTGCTGAGGCTGAGCTTCTGGGCCGTGACAGCCAGAAGGGCTGGTACATTGAG
CCTTCTTACCGCTTCAACGACAGCTTTGGTATTTTCGCACGTTACAACGAGTGGGATAACGAGGCCGGTAACGATGCCGA
TACCACCAAGAAGCTCACCAGTGTAGGTATCAACTACTGGCTGCACGAGAATGTGGTATTCAAGGCCGATTACGAGAAGC
AGAGCGGCGCCCTGGATTCTGATGGCTTCAACCTGGGTGTTGGCTACCAGTTCTGA

Upstream 100 bases:

>100_bases
TCTGGATCATTAATCCCAATGCGAATCGTTTGCATTTATTAAATCAGTTGTTAGAATCCGCTGCGTGCTTAACCCTCAGA
TAATAAAACGGGAAAGGGAA

Downstream 100 bases:

>100_bases
TGCAAGTAGATAAAGGGGGCGTAAGCCCCCTTTTACCTGAGTGACTGCATAACCATGAAGAAATACCTGCTGACCCTGCT
GGCCTGCTGGCCCTTGCTGG

Product: phosphate-selective porin O and P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADATEANASAKSATTIGGYGELH
YNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSELELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMP
VGIINETHEPNTFYGVERNPVESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY
TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWNIDGAEAELLGRDSQKGWYIE
PSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYWLHENVVFKADYEKQSGALDSDGFNLGVGYQF

Sequences:

>Translated_391_residues
MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADATEANASAKSATTIGGYGELH
YNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSELELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMP
VGIINETHEPNTFYGVERNPVESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY
TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWNIDGAEAELLGRDSQKGWYIE
PSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYWLHENVVFKADYEKQSGALDSDGFNLGVGYQF
>Mature_391_residues
MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADATEANASAKSATTIGGYGELH
YNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSELELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMP
VGIINETHEPNTFYGVERNPVESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY
TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWNIDGAEAELLGRDSQKGWYIE
PSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYWLHENVVFKADYEKQSGALDSDGFNLGVGYQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43139; Mature: 43139

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADA
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
TEANASAKSATTIGGYGELHYNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSEL
HHCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCHHHCCHHHHHHHH
ELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMPVGIINETHEPNTFYGVERNP
HHHHHHCCCCCCCCEEHHHHHHHCCHHHHHHHCCCEEEEEEHHHCCCCCCCCEECCCCCC
VESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY
CCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHCCCEECCCCCCHHHHHHHCCCCCCEEEE
TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWN
ECEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCEEEEEEEEEEC
IDGAEAELLGRDSQKGWYIEPSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYW
CCCCHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEEE
LHENVVFKADYEKQSGALDSDGFNLGVGYQF
EECCEEEEECCCHHCCCCCCCCCEECCCCCC
>Mature Secondary Structure
MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADA
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
TEANASAKSATTIGGYGELHYNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSEL
HHCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCHHHCCHHHHHHHH
ELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMPVGIINETHEPNTFYGVERNP
HHHHHHCCCCCCCCEEHHHHHHHCCHHHHHHHCCCEEEEEEHHHCCCCCCCCEECCCCCC
VESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY
CCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHCCCEECCCCCCHHHHHHHCCCCCCEEEE
TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWN
ECEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCEEEEEEEEEEC
IDGAEAELLGRDSQKGWYIEPSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYW
CCCCHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEEE
LHENVVFKADYEKQSGALDSDGFNLGVGYQF
EECCEEEEECCCHHCCCCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]