| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773727
Identifier: 119773727
GI number: 119773727
Start: 734874
End: 736049
Strand: Reverse
Name: 119773727
Synonym: Sama_0589
Alternate gene names: NA
Gene position: 736049-734874 (Counterclockwise)
Preceding gene: 119773728
Following gene: 119773726
Centisome position: 17.09
GC content: 52.72
Gene sequence:
>1176_bases ATGATGAAAAAGACTCTGATCGCCAGCGCTCTGCTGGGTCTGTTCGCCAGCCAAACTGCCATGGCCTCTGACGAAACCGC CGAACTGCGTAAAATCATTGAACAGCAGCAGCAGGTTCTGAAAGATCTGGAAAAACGCCTGGAAGAGACTGAAAAGCGCG TTGAGCAAACTGCCGATGCCACCGAAGCCAATGCCAGTGCCAAGAGCGCCACCACCATCGGCGGCTACGGTGAACTGCAC TACAACAACATCGACAACAATGCAGACAGCAGCAAAGACAAGACCGAAATGGACTTCCACCGTTTCGTACTGTTCTTTGG CCATGAATTCACCAATAAGACCCGTTTTTTCTCTGAGCTGGAACTGGAACACTCTCTGGCCGGCGAAGGCAAGAAAGGTG AAGTTGAGCTGGAGCAGGCTTACATCGAGCACGACTTCACCGACGCTATCACAGCTAAGGCCGGTTTGTTCCTGATGCCA GTGGGTATCATCAACGAAACCCACGAACCCAACACCTTCTACGGTGTTGAACGTAATCCTGTTGAGTCAAACATAGTACC CAGCACCTGGTGGGAAGGCGGTCTGGCCGTCAATCTGAAAGCTGCACCAGGTCTGGCATTTGATGCCGCTATCACTTCCG GCCTCAAGGTTAAAGATGATTACAACGTACGCAGTGGTCGTCAAAAGGTGTCCAACGCCAATGCTGATGCCCTGGCTTAC ACCGGTCGCGTGAAGTACACCGGCATTGCCGGACTTGAGCTGGCTGCAAGTGCCCAGTATCAAAGTGACCTGACCCAGGG TAAAGATGGCGTAGACGAAGCCTCTGCCACACTGCTTGAAGCCCACGGTATCTACAGCATCGGTGGATTTACCATCAAAG CACTTTATGCCCAGTGGAACATTGACGGTGCTGAGGCTGAGCTTCTGGGCCGTGACAGCCAGAAGGGCTGGTACATTGAG CCTTCTTACCGCTTCAACGACAGCTTTGGTATTTTCGCACGTTACAACGAGTGGGATAACGAGGCCGGTAACGATGCCGA TACCACCAAGAAGCTCACCAGTGTAGGTATCAACTACTGGCTGCACGAGAATGTGGTATTCAAGGCCGATTACGAGAAGC AGAGCGGCGCCCTGGATTCTGATGGCTTCAACCTGGGTGTTGGCTACCAGTTCTGA
Upstream 100 bases:
>100_bases TCTGGATCATTAATCCCAATGCGAATCGTTTGCATTTATTAAATCAGTTGTTAGAATCCGCTGCGTGCTTAACCCTCAGA TAATAAAACGGGAAAGGGAA
Downstream 100 bases:
>100_bases TGCAAGTAGATAAAGGGGGCGTAAGCCCCCTTTTACCTGAGTGACTGCATAACCATGAAGAAATACCTGCTGACCCTGCT GGCCTGCTGGCCCTTGCTGG
Product: phosphate-selective porin O and P
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADATEANASAKSATTIGGYGELH YNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSELELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMP VGIINETHEPNTFYGVERNPVESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWNIDGAEAELLGRDSQKGWYIE PSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYWLHENVVFKADYEKQSGALDSDGFNLGVGYQF
Sequences:
>Translated_391_residues MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADATEANASAKSATTIGGYGELH YNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSELELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMP VGIINETHEPNTFYGVERNPVESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWNIDGAEAELLGRDSQKGWYIE PSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYWLHENVVFKADYEKQSGALDSDGFNLGVGYQF >Mature_391_residues MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADATEANASAKSATTIGGYGELH YNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSELELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMP VGIINETHEPNTFYGVERNPVESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWNIDGAEAELLGRDSQKGWYIE PSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYWLHENVVFKADYEKQSGALDSDGFNLGVGYQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43139; Mature: 43139
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADA CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH TEANASAKSATTIGGYGELHYNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSEL HHCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCHHHCCHHHHHHHH ELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMPVGIINETHEPNTFYGVERNP HHHHHHCCCCCCCCEEHHHHHHHCCHHHHHHHCCCEEEEEEHHHCCCCCCCCEECCCCCC VESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY CCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHCCCEECCCCCCHHHHHHHCCCCCCEEEE TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWN ECEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCEEEEEEEEEEC IDGAEAELLGRDSQKGWYIEPSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYW CCCCHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEEE LHENVVFKADYEKQSGALDSDGFNLGVGYQF EECCEEEEECCCHHCCCCCCCCCEECCCCCC >Mature Secondary Structure MMKKTLIASALLGLFASQTAMASDETAELRKIIEQQQQVLKDLEKRLEETEKRVEQTADA CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH TEANASAKSATTIGGYGELHYNNIDNNADSSKDKTEMDFHRFVLFFGHEFTNKTRFFSEL HHCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCHHHCCHHHHHHHH ELEHSLAGEGKKGEVELEQAYIEHDFTDAITAKAGLFLMPVGIINETHEPNTFYGVERNP HHHHHHCCCCCCCCEEHHHHHHHCCHHHHHHHCCCEEEEEEHHHCCCCCCCCEECCCCCC VESNIVPSTWWEGGLAVNLKAAPGLAFDAAITSGLKVKDDYNVRSGRQKVSNANADALAY CCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHCCCEECCCCCCHHHHHHHCCCCCCEEEE TGRVKYTGIAGLELAASAQYQSDLTQGKDGVDEASATLLEAHGIYSIGGFTIKALYAQWN ECEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCEEEEEEEEEEC IDGAEAELLGRDSQKGWYIEPSYRFNDSFGIFARYNEWDNEAGNDADTTKKLTSVGINYW CCCCHHHHHCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEEE LHENVVFKADYEKQSGALDSDGFNLGVGYQF EECCEEEEECCCHHCCCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]