| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is fecA [H]
Identifier: 119773728
GI number: 119773728
Start: 736305
End: 738518
Strand: Reverse
Name: fecA [H]
Synonym: Sama_0590
Alternate gene names: 119773728
Gene position: 738518-736305 (Counterclockwise)
Preceding gene: 119773735
Following gene: 119773727
Centisome position: 17.15
GC content: 55.65
Gene sequence:
>2214_bases ATGATAACTATTGTCATTATCGACAAAAAGGGAGACACCATGACCACCATCGCCAAGCCAGCCATCAAGCTGAGCCTGCT GACCAGCGCCCTGCTGGCAAGCTTTGCCGCCACTGCAACCGCCAATGCCGACATCGAGCAGATCAGCATTTTCGGTAAAA AGAACCCCATCAACACAGTGCCAGGCAGCGCCCATCAGCTGAGCCAGGAAGAGCTGGATACCTTCAAGTATTCCGACATC ATGCGCACCCTGGCCTCGGTGCCCGGGGTCTATATTCAGGAAGAAGAAGGCTATGGTCTGCGCCCCAATCTTGGCATGCG CGGCACGGGTCAGAACCGTTCAGAAAAGATCACCGTGATGGAAGATGGCGTGCTGGCAGCACCGGCGCCTTATGCTTCAC CAGCGGCCTATTACTTCCCAACCTCCGGCCGCATGCAGCAAATTGAAGTGCTAAAAGGCTCTTCTACCGTGAAATACGGC CCGCGCACCACCGGCGGCGTGGTGAACATGGTTTCCCGCCAAATTCCTGATGCCGAACTGGCAGGCGCCCTCGATGTCGC CCTGGGGCAGGATGGCTATGGCAAGTTGCACGCCCACGCCGGTGGTCAGGGCGAACGCATTGGTGCCGTAACCGAAGTGT ACCGTTATCAGGCCGATGGTTTCCGCGACATCAACGGCGTTGGCGGTGACACAGGTTTTGTGAAAAACGATCTGCTGGCC AAAGTGGCCATCGACAGCGCTAAAGATGCCAAATACGCCCAGCGTCTGGAACTCAAACTCAAGTATGCCGATGAAGTCTC CGACGAGACCTACATGGGTCTGACTGACGAAGATTATGCCGCCAAGCCATTCAGCCGCTACTCGGCCTCGCAAAAAGATG AAATGACCACTGAGCACAAGCAGCTGCAACTGATCCATATTATCGATTTCAGCAGTACTGTGAGTCTCGCTACTACGGCT TATTACAACGACTTTGCCCGTAACTGGTACAAAGCCGACAAGGTAGATGGCAAGAGCCTGTCCAAGGGTGGTATTGAGGC AGCCAGCGTCTTCGACGCCAATCCCGAAGGGGCGATTGATGTCAGCGTGAAAGCTAACAACCGGGTGTATATTTCTCAGG GCATTCAAACCGAGCTGGGACTGCTCCTTGGCGATCACCAGTTGGATATAGGTGTGCGCCTGCATCAGGACGAGATGGAC CGCTTCCAGTGGGCCGATACCTACAGTCTGGACGCCAATCAGCAGATGAGCCTGACCAAGGCTGGTGTACCTGGTACCGA CTCTAACCGTATCGACAGCGCCGAAGCCCTGTCTGCTTATGTTCAGGACAGATTCACCCTGGGCGCCTTTACTCTCACCG CCGGTGTGCGCTACGAAGATGTGACCGTGGAGCGCGAAGACTGGGGCAAAGCCAACCCAGGCCGTAACGGCGATGGCGCT TTTAAAGAAAACAGCTTCTCGGCGCTGCTGCCATCACTGTCTGCCACCTGGCAGCTGACCGACAGCACCCTGCTGCTGGC CGGCGTGCAAAAGGGCTTTGCCCCTGCGGCTCCCGGCAACACCAACGGGCAAGAGGAAGAGAGCTGGAACTACGAGGCGG GTACCCGTTTCGTGAACGGCAACTTCAATGCCGAGGCTATCGCTTTCTACGGTGATTACAGCAACATGCACGGCAACTGC ACTGCCGCCCAGGGTTGTGATGAAGACAAGCTGGACAACCAGTACAACGCCGGTGAAGTGGTGGTGAAAGGTCTGGAATT GTCAGCTGGCTATCAATTCAACACTGATGGCGCTTTGAGCTTCCCGGTGAAGTTGGCGTATACCTACACCAGTACGGAGT TCCAGAACAGTTTCGAGTCGGAGTTTGAAACCTGGGGTTCGGTACAGGTGGGTGACGAGTTCAGCTACACCCCCAAGCAT CAGCTGTATCTGAGCGCAGGCATCAGCGTCGAGCAGTGGCAGTTGACCCTGGCTGGCCGTTACACCTCGGATATGCGCGC CACCGCCGGTCAGGGCGACATTGCCGCTGACGACCTGATTGCTGCCAAGACCCTGGTTGATCTATCCGGTCGTTACTTTA TCGATAAACAGCAGGAGGTTTATTTGACCGTTGATAACCTGCTGGATGAAACCTATATGACGACCCGTGCCCATGGCTCG GTGTTTTCTGGCAAGCCCAGAAGCATTACCGTTGGTTATTCCTACAAGTTCTAA
Upstream 100 bases:
>100_bases TAAAAGGCTTTGCCAGCAAGGTTTTACCTTTTTATTACAAAGGTAAAGAAATCGGAAATTAAGCTAGTCTTAAGCACTAC TCCCTAACCTCAAAACACAA
Downstream 100 bases:
>100_bases TAATAAATCTTGATATTCTAAAGGCGGCTTACTTTGAGCCGCCTTTTTCATGTTTTAAATTTATACCTTAAAAATCAATT AATTGGACATTAAACACTTT
Product: putative TonB-dependent receptor protein
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 737; Mature: 737
Protein sequence:
>737_residues MITIVIIDKKGDTMTTIAKPAIKLSLLTSALLASFAATATANADIEQISIFGKKNPINTVPGSAHQLSQEELDTFKYSDI MRTLASVPGVYIQEEEGYGLRPNLGMRGTGQNRSEKITVMEDGVLAAPAPYASPAAYYFPTSGRMQQIEVLKGSSTVKYG PRTTGGVVNMVSRQIPDAELAGALDVALGQDGYGKLHAHAGGQGERIGAVTEVYRYQADGFRDINGVGGDTGFVKNDLLA KVAIDSAKDAKYAQRLELKLKYADEVSDETYMGLTDEDYAAKPFSRYSASQKDEMTTEHKQLQLIHIIDFSSTVSLATTA YYNDFARNWYKADKVDGKSLSKGGIEAASVFDANPEGAIDVSVKANNRVYISQGIQTELGLLLGDHQLDIGVRLHQDEMD RFQWADTYSLDANQQMSLTKAGVPGTDSNRIDSAEALSAYVQDRFTLGAFTLTAGVRYEDVTVEREDWGKANPGRNGDGA FKENSFSALLPSLSATWQLTDSTLLLAGVQKGFAPAAPGNTNGQEEESWNYEAGTRFVNGNFNAEAIAFYGDYSNMHGNC TAAQGCDEDKLDNQYNAGEVVVKGLELSAGYQFNTDGALSFPVKLAYTYTSTEFQNSFESEFETWGSVQVGDEFSYTPKH QLYLSAGISVEQWQLTLAGRYTSDMRATAGQGDIAADDLIAAKTLVDLSGRYFIDKQQEVYLTVDNLLDETYMTTRAHGS VFSGKPRSITVGYSYKF
Sequences:
>Translated_737_residues MITIVIIDKKGDTMTTIAKPAIKLSLLTSALLASFAATATANADIEQISIFGKKNPINTVPGSAHQLSQEELDTFKYSDI MRTLASVPGVYIQEEEGYGLRPNLGMRGTGQNRSEKITVMEDGVLAAPAPYASPAAYYFPTSGRMQQIEVLKGSSTVKYG PRTTGGVVNMVSRQIPDAELAGALDVALGQDGYGKLHAHAGGQGERIGAVTEVYRYQADGFRDINGVGGDTGFVKNDLLA KVAIDSAKDAKYAQRLELKLKYADEVSDETYMGLTDEDYAAKPFSRYSASQKDEMTTEHKQLQLIHIIDFSSTVSLATTA YYNDFARNWYKADKVDGKSLSKGGIEAASVFDANPEGAIDVSVKANNRVYISQGIQTELGLLLGDHQLDIGVRLHQDEMD RFQWADTYSLDANQQMSLTKAGVPGTDSNRIDSAEALSAYVQDRFTLGAFTLTAGVRYEDVTVEREDWGKANPGRNGDGA FKENSFSALLPSLSATWQLTDSTLLLAGVQKGFAPAAPGNTNGQEEESWNYEAGTRFVNGNFNAEAIAFYGDYSNMHGNC TAAQGCDEDKLDNQYNAGEVVVKGLELSAGYQFNTDGALSFPVKLAYTYTSTEFQNSFESEFETWGSVQVGDEFSYTPKH QLYLSAGISVEQWQLTLAGRYTSDMRATAGQGDIAADDLIAAKTLVDLSGRYFIDKQQEVYLTVDNLLDETYMTTRAHGS VFSGKPRSITVGYSYKF >Mature_737_residues MITIVIIDKKGDTMTTIAKPAIKLSLLTSALLASFAATATANADIEQISIFGKKNPINTVPGSAHQLSQEELDTFKYSDI MRTLASVPGVYIQEEEGYGLRPNLGMRGTGQNRSEKITVMEDGVLAAPAPYASPAAYYFPTSGRMQQIEVLKGSSTVKYG PRTTGGVVNMVSRQIPDAELAGALDVALGQDGYGKLHAHAGGQGERIGAVTEVYRYQADGFRDINGVGGDTGFVKNDLLA KVAIDSAKDAKYAQRLELKLKYADEVSDETYMGLTDEDYAAKPFSRYSASQKDEMTTEHKQLQLIHIIDFSSTVSLATTA YYNDFARNWYKADKVDGKSLSKGGIEAASVFDANPEGAIDVSVKANNRVYISQGIQTELGLLLGDHQLDIGVRLHQDEMD RFQWADTYSLDANQQMSLTKAGVPGTDSNRIDSAEALSAYVQDRFTLGAFTLTAGVRYEDVTVEREDWGKANPGRNGDGA FKENSFSALLPSLSATWQLTDSTLLLAGVQKGFAPAAPGNTNGQEEESWNYEAGTRFVNGNFNAEAIAFYGDYSNMHGNC TAAQGCDEDKLDNQYNAGEVVVKGLELSAGYQFNTDGALSFPVKLAYTYTSTEFQNSFESEFETWGSVQVGDEFSYTPKH QLYLSAGISVEQWQLTLAGRYTSDMRATAGQGDIAADDLIAAKTLVDLSGRYFIDKQQEVYLTVDNLLDETYMTTRAHGS VFSGKPRSITVGYSYKF
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=733, Percent_Identity=22.6466575716235, Blast_Score=110, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80182; Mature: 80182
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITIVIIDKKGDTMTTIAKPAIKLSLLTSALLASFAATATANADIEQISIFGKKNPINTV CEEEEEEECCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC PGSAHQLSQEELDTFKYSDIMRTLASVPGVYIQEEEGYGLRPNLGMRGTGQNRSEKITVM CCCHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE EDGVLAAPAPYASPAAYYFPTSGRMQQIEVLKGSSTVKYGPRTTGGVVNMVSRQIPDAEL ECCEEECCCCCCCCCEEEECCCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHCCCCHHH AGALDVALGQDGYGKLHAHAGGQGERIGAVTEVYRYQADGFRDINGVGGDTGFVKNDLLA CCEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHEE KVAIDSAKDAKYAQRLELKLKYADEVSDETYMGLTDEDYAAKPFSRYSASQKDEMTTEHK EEECCCCCCHHHHHEEEEEEEECCCCCCCEEECCCCCCCCCCCHHHHCCCCCHHHHCCCC QLQLIHIIDFSSTVSLATTAYYNDFARNWYKADKVDGKSLSKGGIEAASVFDANPEGAID EEEEEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCEE VSVKANNRVYISQGIQTELGLLLGDHQLDIGVRLHQDEMDRFQWADTYSLDANQQMSLTK EEEECCCEEEEECCCCHHHHEEECCCEEEEEEEECHHHHHHHCCCCEEECCCCCCEEEEE AGVPGTDSNRIDSAEALSAYVQDRFTLGAFTLTAGVRYEDVTVEREDWGKANPGRNGDGA CCCCCCCCCCCCHHHHHHHHHHHCEEEEEEEEECCCEEEEEEEEHHCCCCCCCCCCCCCC FKENSFSALLPSLSATWQLTDSTLLLAGVQKGFAPAAPGNTNGQEEESWNYEAGTRFVNG CCCCCHHHHCCCCCCEEEECCCEEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECC NFNAEAIAFYGDYSNMHGNCTAAQGCDEDKLDNQYNAGEVVVKGLELSAGYQFNTDGALS CCCCEEEEEEECCCCCCCCEEECCCCCHHHCCCCCCCCEEEEEEEEEECCEEECCCCCEE FPVKLAYTYTSTEFQNSFESEFETWGSVQVGDEFSYTPKHQLYLSAGISVEQWQLTLAGR CCEEEEEEEECHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCEEEEEEEEEECC YTSDMRATAGQGDIAADDLIAAKTLVDLSGRYFIDKQQEVYLTVDNLLDETYMTTRAHGS CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEEHHHHHHHHHHEEECCCC VFSGKPRSITVGYSYKF EECCCCCEEEEEEEECC >Mature Secondary Structure MITIVIIDKKGDTMTTIAKPAIKLSLLTSALLASFAATATANADIEQISIFGKKNPINTV CEEEEEEECCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC PGSAHQLSQEELDTFKYSDIMRTLASVPGVYIQEEEGYGLRPNLGMRGTGQNRSEKITVM CCCHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE EDGVLAAPAPYASPAAYYFPTSGRMQQIEVLKGSSTVKYGPRTTGGVVNMVSRQIPDAEL ECCEEECCCCCCCCCEEEECCCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHCCCCHHH AGALDVALGQDGYGKLHAHAGGQGERIGAVTEVYRYQADGFRDINGVGGDTGFVKNDLLA CCEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHEE KVAIDSAKDAKYAQRLELKLKYADEVSDETYMGLTDEDYAAKPFSRYSASQKDEMTTEHK EEECCCCCCHHHHHEEEEEEEECCCCCCCEEECCCCCCCCCCCHHHHCCCCCHHHHCCCC QLQLIHIIDFSSTVSLATTAYYNDFARNWYKADKVDGKSLSKGGIEAASVFDANPEGAID EEEEEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCEE VSVKANNRVYISQGIQTELGLLLGDHQLDIGVRLHQDEMDRFQWADTYSLDANQQMSLTK EEEECCCEEEEECCCCHHHHEEECCCEEEEEEEECHHHHHHHCCCCEEECCCCCCEEEEE AGVPGTDSNRIDSAEALSAYVQDRFTLGAFTLTAGVRYEDVTVEREDWGKANPGRNGDGA CCCCCCCCCCCCHHHHHHHHHHHCEEEEEEEEECCCEEEEEEEEHHCCCCCCCCCCCCCC FKENSFSALLPSLSATWQLTDSTLLLAGVQKGFAPAAPGNTNGQEEESWNYEAGTRFVNG CCCCCHHHHCCCCCCEEEECCCEEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECC NFNAEAIAFYGDYSNMHGNCTAAQGCDEDKLDNQYNAGEVVVKGLELSAGYQFNTDGALS CCCCEEEEEEECCCCCCCCEEECCCCCHHHCCCCCCCCEEEEEEEEEECCEEECCCCCEE FPVKLAYTYTSTEFQNSFESEFETWGSVQVGDEFSYTPKHQLYLSAGISVEQWQLTLAGR CCEEEEEEEECHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCEEEEEEEEEECC YTSDMRATAGQGDIAADDLIAAKTLVDLSGRYFIDKQQEVYLTVDNLLDETYMTTRAHGS CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEEHHHHHHHHHHEEECCCC VFSGKPRSITVGYSYKF EECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]