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The map label for this gene is yafC [C]

Identifier: 119773717

GI number: 119773717

Start: 719846

End: 720757

Strand: Reverse

Name: yafC [C]

Synonym: Sama_0579

Alternate gene names: 119773717

Gene position: 720757-719846 (Counterclockwise)

Preceding gene: 119773724

Following gene: 119773716

Centisome position: 16.74

GC content: 53.18

Gene sequence:

>912_bases
ATGCCAGATTTGAATGGGATGGCGCTATTTGCCGCAGTGGTCAGATCTCAGGGTTTCAGCCAGGCGGCCAGGGATATTGG
CATGCCAAAATCCACCATTAGTCGTAAAGTTGCTCAATTGGAAGAAGAACTTGGCGTACGACTGCTGCAGCGTGACAGCC
GCAATTTAAGCCTCACCCAGGTAGGCACCCTTTTTTATCAGCACTGCGAAACCATAGTGAATGAGCTCGAGGCTGCCAAG
GCGGTGATCGAGCATACCCACGCTGACGTTTCCGGCTCGCTGCGTATCGCCATCCCCGTCTCGTTCAGCCAGGAATTAAT
CGCCAATTTGTGCAGTGGCTTTTTACGCCTCTATCCCAGTGTGGAACTCGATGTCCAATTTACCGACTCGGATGTAGGTC
TGGTGGGTGAAGGTTACGATATCGCCATCAAGTACGGCCCACTGCAACCTTCCGACAATGTGGCCAGATTGCTGTTTGAG
CGTCAGCCTATTTTGGTGGCAAGTCCAGGTTACCTTAAAAAGCATGGCACCCCTGCCACACCAAAAGAGCTGGGGCAACA
CGCCGGCATTTTACTTGGCACCACACGCTCTGCCCCCATCTGGCCTCTGGGCAAAGGGGGACGCAAAACCATGGTCAGTT
TCAATCGCAAGGTGCGGGTTAACAGCGCCGTGATGGTGCGCCAATTGGCATTGGATGATTTTGGTATTGCCATGCTGTCC
CATGCCCAGTGCAAAAAGGATCTCGCCAGCGGTTCCCTGTTGCCCATATTGCCCGAGTGGCCCATGGAGCCCTTTAAGGT
CTATGGGGTCTATTCCAGTCGAAAACAGCTGGCCACCAACATCAGTGTGTTTCTCGACTTCTTTATCAAGCGTTTCGGCA
GTCAGGAATCCCTGCTTGGCATGATGGGCTAA

Upstream 100 bases:

>100_bases
TCTGAAAATTTTTAGCCATCAAATATACCTTCCTTCGGTTTGCAAATACCATTAAACTGCCTTGGACGCTTTGTTCCATT
TTTGAGACGATAGAAAAAAC

Downstream 100 bases:

>100_bases
GGCAGTCAAAATCTCCGCGCATTCATCACCTCGAGACCGAAAAGCTCGCCTTTTTTTCCGTGCTGTGGTACCCCTAAAGT
TTGACTAAACTAAAGCTAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MPDLNGMALFAAVVRSQGFSQAARDIGMPKSTISRKVAQLEEELGVRLLQRDSRNLSLTQVGTLFYQHCETIVNELEAAK
AVIEHTHADVSGSLRIAIPVSFSQELIANLCSGFLRLYPSVELDVQFTDSDVGLVGEGYDIAIKYGPLQPSDNVARLLFE
RQPILVASPGYLKKHGTPATPKELGQHAGILLGTTRSAPIWPLGKGGRKTMVSFNRKVRVNSAVMVRQLALDDFGIAMLS
HAQCKKDLASGSLLPILPEWPMEPFKVYGVYSSRKQLATNISVFLDFFIKRFGSQESLLGMMG

Sequences:

>Translated_303_residues
MPDLNGMALFAAVVRSQGFSQAARDIGMPKSTISRKVAQLEEELGVRLLQRDSRNLSLTQVGTLFYQHCETIVNELEAAK
AVIEHTHADVSGSLRIAIPVSFSQELIANLCSGFLRLYPSVELDVQFTDSDVGLVGEGYDIAIKYGPLQPSDNVARLLFE
RQPILVASPGYLKKHGTPATPKELGQHAGILLGTTRSAPIWPLGKGGRKTMVSFNRKVRVNSAVMVRQLALDDFGIAMLS
HAQCKKDLASGSLLPILPEWPMEPFKVYGVYSSRKQLATNISVFLDFFIKRFGSQESLLGMMG
>Mature_302_residues
PDLNGMALFAAVVRSQGFSQAARDIGMPKSTISRKVAQLEEELGVRLLQRDSRNLSLTQVGTLFYQHCETIVNELEAAKA
VIEHTHADVSGSLRIAIPVSFSQELIANLCSGFLRLYPSVELDVQFTDSDVGLVGEGYDIAIKYGPLQPSDNVARLLFER
QPILVASPGYLKKHGTPATPKELGQHAGILLGTTRSAPIWPLGKGGRKTMVSFNRKVRVNSAVMVRQLALDDFGIAMLSH
AQCKKDLASGSLLPILPEWPMEPFKVYGVYSSRKQLATNISVFLDFFIKRFGSQESLLGMMG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=34.7222222222222, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=29.7945205479452, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=27.7966101694915, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=27.9461279461279, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=27.3356401384083, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=24.9134948096886, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=26.1484098939929, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788706, Length=261, Percent_Identity=26.8199233716475, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=24.6621621621622, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789173, Length=265, Percent_Identity=23.0188679245283, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI157672245, Length=171, Percent_Identity=32.7485380116959, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787601, Length=169, Percent_Identity=28.4023668639053, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33193; Mature: 33062

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLNGMALFAAVVRSQGFSQAARDIGMPKSTISRKVAQLEEELGVRLLQRDSRNLSLTQ
CCCCCHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
VGTLFYQHCETIVNELEAAKAVIEHTHADVSGSLRIAIPVSFSQELIANLCSGFLRLYPS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
VELDVQFTDSDVGLVGEGYDIAIKYGPLQPSDNVARLLFERQPILVASPGYLKKHGTPAT
CEEEEEECCCCCCEEECCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCHHCCCCCCC
PKELGQHAGILLGTTRSAPIWPLGKGGRKTMVSFNRKVRVNSAVMVRQLALDDFGIAMLS
HHHHHHHCCEEEECCCCCCCCCCCCCCCHHHEECCCEEEECHHHHHHHHHHHHHHHHHHH
HAQCKKDLASGSLLPILPEWPMEPFKVYGVYSSRKQLATNISVFLDFFIKRFGSQESLLG
HHHHHHHHHCCCEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
MMG
CCC
>Mature Secondary Structure 
PDLNGMALFAAVVRSQGFSQAARDIGMPKSTISRKVAQLEEELGVRLLQRDSRNLSLTQ
CCCCHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
VGTLFYQHCETIVNELEAAKAVIEHTHADVSGSLRIAIPVSFSQELIANLCSGFLRLYPS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
VELDVQFTDSDVGLVGEGYDIAIKYGPLQPSDNVARLLFERQPILVASPGYLKKHGTPAT
CEEEEEECCCCCCEEECCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCHHCCCCCCC
PKELGQHAGILLGTTRSAPIWPLGKGGRKTMVSFNRKVRVNSAVMVRQLALDDFGIAMLS
HHHHHHHCCEEEECCCCCCCCCCCCCCCHHHEECCCEEEECHHHHHHHHHHHHHHHHHHH
HAQCKKDLASGSLLPILPEWPMEPFKVYGVYSSRKQLATNISVFLDFFIKRFGSQESLLG
HHHHHHHHHCCCEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
MMG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]