| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773716
Identifier: 119773716
GI number: 119773716
Start: 718547
End: 719704
Strand: Reverse
Name: 119773716
Synonym: Sama_0578
Alternate gene names: NA
Gene position: 719704-718547 (Counterclockwise)
Preceding gene: 119773717
Following gene: 119773715
Centisome position: 16.71
GC content: 55.01
Gene sequence:
>1158_bases ATGTTAAAGCGTATGCTCCCTGCTCTGTTCATTGCCGGTCTGGGCACTCTGCCCCTTTTGGCACAGGCCAATCTCGACGT GGAAGAACTGCGACTTCCCAAGGCAAACAGCGACCTCGGTGAAGTAGCAAGCCGCTATCAGGGGCTGATTGACGGTCTCA AAGACAAACTGGCAGCCGGTAACGAAGAAAAGGCCGTGACCCAGGCGATGGCATATCAGGGCATTCGTCTATGGCAGCAA GCGGTGCGGGATGTGCAGGCCGGTCATATCGATGATCGCAGTTTGTATTGGGCCAGACTGGCTATGCGAACCAGTTTGAA GCAGGACAAAGCAGGCTATGCCATTGTGCCCTGGCAAAGAGACATTCTGGTGCGCGCCGTTGAAACAGCCTCCCGGGGTT TTTCGGATATCCATTTTGGCGACGATGTACAAATTCGCATTCTGCTTACCGGCTTTGACCCCTTCTTCCTCGACCGCAAC ATAGGCCAGAGCAATCCGTCGGGTATCACCGCGCTGATGCTGGATGGCTATAAATTTAAGGTGGGCGGCAAGCAGGCACA AATCGAGACGGTGATGATCCCGGTGCGCTTTGCCGATTTCGATCAGGGCATGATTGAATCGCTGTTGACGCCCTTCTATC GCAAGCGGTCCATTGATGCGGTATTTACCGTGAGCATGGGACGCGATGATTTCGACCTCGAACGTTTCCCCGGCCGCAAC CGCAGCGCCGAGGCCCCGGATAACCTGAATGTACTGACCGGTGCCACCAAAACCCAACCCATAGCGCCCATGCTGAACGG GAACTCACTCAACGGCGATGAATTTGTGGAATTTTCTTTACCCGTAACAGCCATGCAGGCGGCACCGGGTAACTACAAGG TCAATGACAATCGCAAGGTCACCACCCTGGGCAAAGGCACCTTTGATGCGTCTTCCCTCGCTGAACTTCAAGAAGCCATT TCGGTAGAAGGCTCAGGCGGCGGCTATCTTTCCAATGAAATTTCTTACCGTGCCGTGCTGCTGAGGGACCAGTTTGGCCT CAAATTACCCGTGGGCCATATCCATACTCCCAAGGTTGCCGGATATGACGCCGAAGCAGGGAAAGCCATAGCAGAGCAGG TGCGCGCCATGGTAGAGCTTGCCGCCGCAACGCTGTAA
Upstream 100 bases:
>100_bases AAGCTCGCCTTTTTTTCCGTGCTGTGGTACCCCTAAAGTTTGACTAAACTAAAGCTAACCCCATAGTCTGAAAGATGAAA TTTGTCGTTAAGGATGCCTC
Downstream 100 bases:
>100_bases ACAACACCGCCAGGCTTGTTTGGGTCTTGGGGCCAGAGGTATTATGCCAGAGCCTTTGATTTCAGGACCCTTATGTTTTC GTTTTTTCGCCAGTCCAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MLKRMLPALFIAGLGTLPLLAQANLDVEELRLPKANSDLGEVASRYQGLIDGLKDKLAAGNEEKAVTQAMAYQGIRLWQQ AVRDVQAGHIDDRSLYWARLAMRTSLKQDKAGYAIVPWQRDILVRAVETASRGFSDIHFGDDVQIRILLTGFDPFFLDRN IGQSNPSGITALMLDGYKFKVGGKQAQIETVMIPVRFADFDQGMIESLLTPFYRKRSIDAVFTVSMGRDDFDLERFPGRN RSAEAPDNLNVLTGATKTQPIAPMLNGNSLNGDEFVEFSLPVTAMQAAPGNYKVNDNRKVTTLGKGTFDASSLAELQEAI SVEGSGGGYLSNEISYRAVLLRDQFGLKLPVGHIHTPKVAGYDAEAGKAIAEQVRAMVELAAATL
Sequences:
>Translated_385_residues MLKRMLPALFIAGLGTLPLLAQANLDVEELRLPKANSDLGEVASRYQGLIDGLKDKLAAGNEEKAVTQAMAYQGIRLWQQ AVRDVQAGHIDDRSLYWARLAMRTSLKQDKAGYAIVPWQRDILVRAVETASRGFSDIHFGDDVQIRILLTGFDPFFLDRN IGQSNPSGITALMLDGYKFKVGGKQAQIETVMIPVRFADFDQGMIESLLTPFYRKRSIDAVFTVSMGRDDFDLERFPGRN RSAEAPDNLNVLTGATKTQPIAPMLNGNSLNGDEFVEFSLPVTAMQAAPGNYKVNDNRKVTTLGKGTFDASSLAELQEAI SVEGSGGGYLSNEISYRAVLLRDQFGLKLPVGHIHTPKVAGYDAEAGKAIAEQVRAMVELAAATL >Mature_385_residues MLKRMLPALFIAGLGTLPLLAQANLDVEELRLPKANSDLGEVASRYQGLIDGLKDKLAAGNEEKAVTQAMAYQGIRLWQQ AVRDVQAGHIDDRSLYWARLAMRTSLKQDKAGYAIVPWQRDILVRAVETASRGFSDIHFGDDVQIRILLTGFDPFFLDRN IGQSNPSGITALMLDGYKFKVGGKQAQIETVMIPVRFADFDQGMIESLLTPFYRKRSIDAVFTVSMGRDDFDLERFPGRN RSAEAPDNLNVLTGATKTQPIAPMLNGNSLNGDEFVEFSLPVTAMQAAPGNYKVNDNRKVTTLGKGTFDASSLAELQEAI SVEGSGGGYLSNEISYRAVLLRDQFGLKLPVGHIHTPKVAGYDAEAGKAIAEQVRAMVELAAATL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42071; Mature: 42071
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRMLPALFIAGLGTLPLLAQANLDVEELRLPKANSDLGEVASRYQGLIDGLKDKLAAG CHHHHHHHHHHHCCCCCHHHEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC NEEKAVTQAMAYQGIRLWQQAVRDVQAGHIDDRSLYWARLAMRTSLKQDKAGYAIVPWQR CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCH DILVRAVETASRGFSDIHFGDDVQIRILLTGFDPFFLDRNIGQSNPSGITALMLDGYKFK HHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHEECCCCCCCCCCEEEEEECCEEEE VGGKQAQIETVMIPVRFADFDQGMIESLLTPFYRKRSIDAVFTVSMGRDDFDLERFPGRN ECCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCCC RSAEAPDNLNVLTGATKTQPIAPMLNGNSLNGDEFVEFSLPVTAMQAAPGNYKVNDNRKV CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCEEECCCCEE TTLGKGTFDASSLAELQEAISVEGSGGGYLSNEISYRAVLLRDQFGLKLPVGHIHTPKVA EEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC GYDAEAGKAIAEQVRAMVELAAATL CCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLKRMLPALFIAGLGTLPLLAQANLDVEELRLPKANSDLGEVASRYQGLIDGLKDKLAAG CHHHHHHHHHHHCCCCCHHHEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC NEEKAVTQAMAYQGIRLWQQAVRDVQAGHIDDRSLYWARLAMRTSLKQDKAGYAIVPWQR CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCH DILVRAVETASRGFSDIHFGDDVQIRILLTGFDPFFLDRNIGQSNPSGITALMLDGYKFK HHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHEECCCCCCCCCCEEEEEECCEEEE VGGKQAQIETVMIPVRFADFDQGMIESLLTPFYRKRSIDAVFTVSMGRDDFDLERFPGRN ECCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCCC RSAEAPDNLNVLTGATKTQPIAPMLNGNSLNGDEFVEFSLPVTAMQAAPGNYKVNDNRKV CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCEEECCCCEE TTLGKGTFDASSLAELQEAISVEGSGGGYLSNEISYRAVLLRDQFGLKLPVGHIHTPKVA EEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC GYDAEAGKAIAEQVRAMVELAAATL CCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]