| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yjgA [C]
Identifier: 119773621
GI number: 119773621
Start: 592271
End: 592819
Strand: Reverse
Name: yjgA [C]
Synonym: Sama_0481
Alternate gene names: 119773621
Gene position: 592819-592271 (Counterclockwise)
Preceding gene: 119773623
Following gene: 119773616
Centisome position: 13.77
GC content: 53.01
Gene sequence:
>549_bases ATGAACGTCGTTGGCGATCCAGAGAATTTCAAACAGCCCTATGATGATGACGAAAACTATGTCAGCAAGTCATCTTTCAA GCGGGAATCCCATGCTGCACAGGACCTGGGTAAGCGTCTGCTTGGTCTGAGCAAGAGCCAGCTCGAAAAGCTGGATCTGG AAGAAGACCTGCTGGATGCCCTGGCTGCAGCCAAAAAAATTAAACCCAACAGTGAGGCCCTGCGCCGTCAGATCCAATTT ATTGGCAAACTGATGCGTAACCTGGACACCGAGGCCATAGTCGCTTCGCTGGACAAGCTGGCCAACAAAAACAACAACCA GGCTGCCCGTCAGCATGTGCTTGAAAAAATTCGCGATCGTTTGCTTGCCGACGGTGACAGCGAGATCCAGGCACTGGTAG AGGAGCACCCAACCTTTGACCGCCAGAAACTGCGTCAGATGGTGCGTGCAACCGCCAAGGAAGTCGGCAAAGACGCGGAA AAAGGTCTTGAGTCCAAGGCTGCCAAGGAGCTCCTCAAGTACTTGCGGGACAATACTCCCGAGTCCTGA
Upstream 100 bases:
>100_bases CAAATGTGCTCCCTTTGCAGACAAAATCTGCGCCCGAGGCAGCAGTTTCCCCTGCTTAATGGTAAGATTGCCGGATTGCG TGTAGAGAGGTTTTGAGCGA
Downstream 100 bases:
>100_bases AGACTGCCACGCCGTCAGACAGATTAGCGCCCCGCAATGCGGGGCGTTTTCTTACCCCTGTTTTGGGGGACTCAGTTGAT TCACTTCCCGCTGCCTGACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MNVVGDPENFKQPYDDDENYVSKSSFKRESHAAQDLGKRLLGLSKSQLEKLDLEEDLLDALAAAKKIKPNSEALRRQIQF IGKLMRNLDTEAIVASLDKLANKNNNQAARQHVLEKIRDRLLADGDSEIQALVEEHPTFDRQKLRQMVRATAKEVGKDAE KGLESKAAKELLKYLRDNTPES
Sequences:
>Translated_182_residues MNVVGDPENFKQPYDDDENYVSKSSFKRESHAAQDLGKRLLGLSKSQLEKLDLEEDLLDALAAAKKIKPNSEALRRQIQF IGKLMRNLDTEAIVASLDKLANKNNNQAARQHVLEKIRDRLLADGDSEIQALVEEHPTFDRQKLRQMVRATAKEVGKDAE KGLESKAAKELLKYLRDNTPES >Mature_182_residues MNVVGDPENFKQPYDDDENYVSKSSFKRESHAAQDLGKRLLGLSKSQLEKLDLEEDLLDALAAAKKIKPNSEALRRQIQF IGKLMRNLDTEAIVASLDKLANKNNNQAARQHVLEKIRDRLLADGDSEIQALVEEHPTFDRQKLRQMVRATAKEVGKDAE KGLESKAAKELLKYLRDNTPES
Specific function: Unknown
COG id: COG3028
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0307 family [H]
Homologues:
Organism=Escherichia coli, GI1790681, Length=158, Percent_Identity=39.873417721519, Blast_Score=106, Evalue=9e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023153 - InterPro: IPR006839 [H]
Pfam domain/function: PF04751 DUF615 [H]
EC number: NA
Molecular weight: Translated: 20584; Mature: 20584
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVVGDPENFKQPYDDDENYVSKSSFKRESHAAQDLGKRLLGLSKSQLEKLDLEEDLLDA CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHH LAAAKKIKPNSEALRRQIQFIGKLMRNLDTEAIVASLDKLANKNNNQAARQHVLEKIRDR HHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LLADGDSEIQALVEEHPTFDRQKLRQMVRATAKEVGKDAEKGLESKAAKELLKYLRDNTP HHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC ES CC >Mature Secondary Structure MNVVGDPENFKQPYDDDENYVSKSSFKRESHAAQDLGKRLLGLSKSQLEKLDLEEDLLDA CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHH LAAAKKIKPNSEALRRQIQFIGKLMRNLDTEAIVASLDKLANKNNNQAARQHVLEKIRDR HHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LLADGDSEIQALVEEHPTFDRQKLRQMVRATAKEVGKDAEKGLESKAAKELLKYLRDNTP HHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC ES CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA