| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773569
Identifier: 119773569
GI number: 119773569
Start: 527429
End: 527809
Strand: Reverse
Name: 119773569
Synonym: Sama_0429
Alternate gene names: NA
Gene position: 527809-527429 (Counterclockwise)
Preceding gene: 119773574
Following gene: 119773568
Centisome position: 12.26
GC content: 49.34
Gene sequence:
>381_bases ATGAGCCATCCCCAGGTTGTATCCCTTAAGCTGAAACGAAAATCACGTCTGCTGGAAGTGGGATTTGACGATGGCAGCCA GTATCAGCTGAGCTGCGAATTCCTGAGGGTTTACTCCCCATCGGCAGAAGTTCACGGCCACGGTAACCCGGTACTGGTTA CCCATAAAAAGGACGTCAACATCACGGCCATCGAACCTGTAGGTAACTACGCGGTTAAATTGGTGTTTGATGATGGCCAT GATACCGGACTTTATTCGTGGCAGGTATTGCATCAACTCGCCACCAATCAATTAAATTTGTGGGAACAGTATCTGGCGCG CCTGCGTGCCGAAAAAGGCTCCAGAGAGCCAATGATTCCCATGAATATCAGCTATCGCTAA
Upstream 100 bases:
>100_bases GACCTTGGCTGGAAAGCCACACCTTTTTCTGTGTTTCGGGGTTCACAATCATCGCAAAGCGAGCGACCATATCCGGGTTA ATCCACGGTCAGGAGCCCCC
Downstream 100 bases:
>100_bases TTTTTGTGACGACCGGGACGGCCGGAATAATCATCCGGCCACCTAGTCGAAAGTAGCATCCCCCACGGACGAAAAGCCGC CAGTATAGTGCATTTGTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 126; Mature: 125
Protein sequence:
>126_residues MSHPQVVSLKLKRKSRLLEVGFDDGSQYQLSCEFLRVYSPSAEVHGHGNPVLVTHKKDVNITAIEPVGNYAVKLVFDDGH DTGLYSWQVLHQLATNQLNLWEQYLARLRAEKGSREPMIPMNISYR
Sequences:
>Translated_126_residues MSHPQVVSLKLKRKSRLLEVGFDDGSQYQLSCEFLRVYSPSAEVHGHGNPVLVTHKKDVNITAIEPVGNYAVKLVFDDGH DTGLYSWQVLHQLATNQLNLWEQYLARLRAEKGSREPMIPMNISYR >Mature_125_residues SHPQVVSLKLKRKSRLLEVGFDDGSQYQLSCEFLRVYSPSAEVHGHGNPVLVTHKKDVNITAIEPVGNYAVKLVFDDGHD TGLYSWQVLHQLATNQLNLWEQYLARLRAEKGSREPMIPMNISYR
Specific function: Unknown
COG id: COG3536
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14378; Mature: 14246
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHPQVVSLKLKRKSRLLEVGFDDGSQYQLSCEFLRVYSPSAEVHGHGNPVLVTHKKDVN CCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEEEEECCCCEECCCCCCEEEEECCCCE ITAIEPVGNYAVKLVFDDGHDTGLYSWQVLHQLATNQLNLWEQYLARLRAEKGSREPMIP EEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC MNISYR EEECCC >Mature Secondary Structure SHPQVVSLKLKRKSRLLEVGFDDGSQYQLSCEFLRVYSPSAEVHGHGNPVLVTHKKDVN CCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEEEEECCCCEECCCCCCEEEEECCCCE ITAIEPVGNYAVKLVFDDGHDTGLYSWQVLHQLATNQLNLWEQYLARLRAEKGSREPMIP EEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC MNISYR EEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA