| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773574
Identifier: 119773574
GI number: 119773574
Start: 533075
End: 534367
Strand: Reverse
Name: 119773574
Synonym: Sama_0434
Alternate gene names: NA
Gene position: 534367-533075 (Counterclockwise)
Preceding gene: 119773575
Following gene: 119773569
Centisome position: 12.41
GC content: 57.7
Gene sequence:
>1293_bases ATGCGCCATACCTCATCCCTGTCCCGCTTGTCCTATTTGTCAGTGTCATTGACTTTGTCGGCGGCCATGCTGCCCTTTTC AGCACTGGCTGCCACCTTTATCAGCGCCGATGCTCTGCTGGACGTACGCAGCGGCAAGCTGATTGACTCACCGCTACTGA AAATTGAAGAAGGTCGCATCGTGGAACTGGCGACCCAGGGCAAGCTCGACATCCCAGCCGGCAGCGAGCTGATTGAACTC AAAGGCAAGACCCTGCTGCCGGGGCTGATGGACATGCACGTGCACCTTGGCAGCGACGCCGAAGACAACTTCCTCGAGTC GATGAACTACTCAATCCCCCGTCAAACGGTCAAGGCGGTGAAAAACGCCAAGAAGACACTCGAAGCGGGTTTTACCACGG TGCGGGATCTGGGCGATGCAGGCTACAGCGTGATTGCAGTGCGTGATGGCATCAATGCCGGTGAAATCCCCGGCCCACGC ATTTGGAGCGCGGGCCATGCCCTGTCAATCACGGGTGGCCACTGCGATGACAACTTCAGCGCACCCGAAATGCACTCGGT GGCAGGTGGTGTGGCCGACGGCCCTTGGGCGGTCCGGGCCAAGGCGCGGGAAAATATCAAATACGGCGCCAATACCCTGA AGATTTGCGCCACCGGTGGCGTGTTCTCCAAGGGTACCAAGGTGGGCGTGCAACAATATACCGAGGATGAACTCAGGGCC GCCGCTGAAGAAGCCCATCAGCGCGGGCTTATCATCGCCGCCCACGCCCATGGCACAAACGGCATCAAGGCCGCCATCCG CGCCGGTATCGACAGTGTCGAACACTGCAGTTTTCTCGACGATGAGGCCATCAAGCTGGCCATCAAAAACGGCACTTATC TGAGCTGCGATATTTACAACACTGAGTACACCCTCGCCTTTGGTGCCGCCAACGGTGTGCCCGAGGAAAACATCAATAAA GAAAAACAGGTGTCCCAGGCCCAGCGCGACAGCTTCCGTAAGGCCACCAAGGCTGGTGCGAAAATGGTGTTTGGCTCCGA TGCCGCCATTTACCCCCATGGCGATAACGGCAAGCAGTTCGCCACCATGGTGCAATTTGGCATGACGCCACTGCAGGCGA TTCAGGCAGCCACCCTCACCAGTGCCGCTTTGCTCAAGCAGCAGGATTTAGGCGAGCTGAAACCCGGGTTTCTGGCCGAT ATCATCGCGGTAGATGGCAATCCACTGGACAATATCCGCCTGCTGGAGAATGTCAGCTTCGTGATGAAAGATGGCAAGGT GTTCAAGGGCTGA
Upstream 100 bases:
>100_bases AAGACTCCAGCCCGGGCGTTGTTGCGCCCGGGTCGCTGAGGTATGCTCGAAAATCTGCCCCCTGCCGGGCCACTTTGCCG AACAACAACGAGAACATCCG
Downstream 100 bases:
>100_bases GACCCCTTGTCGCCCTTTCAACACAGGTGCTCAAAATGATTGAGCACCCCGTGTAAATAGGCCTTGTCGCTGCCGCCGAG ATGGGGTTGTCGGGATAGAT
Product: putative secreted hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRIVELATQGKLDIPAGSELIEL KGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAVKNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPR IWSAGHALSITGGHCDDNFSAPEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYNTEYTLAFGAANGVPEENINK EKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQFATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLAD IIAVDGNPLDNIRLLENVSFVMKDGKVFKG
Sequences:
>Translated_430_residues MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRIVELATQGKLDIPAGSELIEL KGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAVKNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPR IWSAGHALSITGGHCDDNFSAPEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYNTEYTLAFGAANGVPEENINK EKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQFATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLAD IIAVDGNPLDNIRLLENVSFVMKDGKVFKG >Mature_430_residues MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRIVELATQGKLDIPAGSELIEL KGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAVKNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPR IWSAGHALSITGGHCDDNFSAPEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYNTEYTLAFGAANGVPEENINK EKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQFATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLAD IIAVDGNPLDNIRLLENVSFVMKDGKVFKG
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.coelicolor SCO1861 [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322248, Length=331, Percent_Identity=33.5347432024169, Blast_Score=152, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: NA
Molecular weight: Translated: 45730; Mature: 45730
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRI CCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECCCCEEECCCCE VELATQGKLDIPAGSELIELKGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAV EEEECCCCEECCCCCCEEEECCCCCCCCHHEEEEECCCCCCHHHHHHCCCCCCHHHHHHH KNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPRIWSAGHALSITGGHCDDNFS HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCCCC APEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA CCCHHHHCCCCCCCCEEEEHHHHCCHHCCCCEEEEEEECCCCCCCCHHHHHHHCHHHHHH AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYN HHHHHHHCCEEEEEECCCCCHHHHHHHHCCCHHHHHCCCCCCEEEEEEECCCEEEEEEEC TEYTLAFGAANGVPEENINKEKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQF CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCHHH ATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLADIIAVDGNPLDNIRLLENVSF HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHH VMKDGKVFKG EEECCEECCC >Mature Secondary Structure MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRI CCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECCCCEEECCCCE VELATQGKLDIPAGSELIELKGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAV EEEECCCCEECCCCCCEEEECCCCCCCCHHEEEEECCCCCCHHHHHHCCCCCCHHHHHHH KNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPRIWSAGHALSITGGHCDDNFS HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCCCC APEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA CCCHHHHCCCCCCCCEEEEHHHHCCHHCCCCEEEEEEECCCCCCCCHHHHHHHCHHHHHH AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYN HHHHHHHCCEEEEEECCCCCHHHHHHHHCCCHHHHHCCCCCCEEEEEEECCCEEEEEEEC TEYTLAFGAANGVPEENINKEKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQF CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCHHH ATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLADIIAVDGNPLDNIRLLENVSF HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHH VMKDGKVFKG EEECCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]