Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773574

Identifier: 119773574

GI number: 119773574

Start: 533075

End: 534367

Strand: Reverse

Name: 119773574

Synonym: Sama_0434

Alternate gene names: NA

Gene position: 534367-533075 (Counterclockwise)

Preceding gene: 119773575

Following gene: 119773569

Centisome position: 12.41

GC content: 57.7

Gene sequence:

>1293_bases
ATGCGCCATACCTCATCCCTGTCCCGCTTGTCCTATTTGTCAGTGTCATTGACTTTGTCGGCGGCCATGCTGCCCTTTTC
AGCACTGGCTGCCACCTTTATCAGCGCCGATGCTCTGCTGGACGTACGCAGCGGCAAGCTGATTGACTCACCGCTACTGA
AAATTGAAGAAGGTCGCATCGTGGAACTGGCGACCCAGGGCAAGCTCGACATCCCAGCCGGCAGCGAGCTGATTGAACTC
AAAGGCAAGACCCTGCTGCCGGGGCTGATGGACATGCACGTGCACCTTGGCAGCGACGCCGAAGACAACTTCCTCGAGTC
GATGAACTACTCAATCCCCCGTCAAACGGTCAAGGCGGTGAAAAACGCCAAGAAGACACTCGAAGCGGGTTTTACCACGG
TGCGGGATCTGGGCGATGCAGGCTACAGCGTGATTGCAGTGCGTGATGGCATCAATGCCGGTGAAATCCCCGGCCCACGC
ATTTGGAGCGCGGGCCATGCCCTGTCAATCACGGGTGGCCACTGCGATGACAACTTCAGCGCACCCGAAATGCACTCGGT
GGCAGGTGGTGTGGCCGACGGCCCTTGGGCGGTCCGGGCCAAGGCGCGGGAAAATATCAAATACGGCGCCAATACCCTGA
AGATTTGCGCCACCGGTGGCGTGTTCTCCAAGGGTACCAAGGTGGGCGTGCAACAATATACCGAGGATGAACTCAGGGCC
GCCGCTGAAGAAGCCCATCAGCGCGGGCTTATCATCGCCGCCCACGCCCATGGCACAAACGGCATCAAGGCCGCCATCCG
CGCCGGTATCGACAGTGTCGAACACTGCAGTTTTCTCGACGATGAGGCCATCAAGCTGGCCATCAAAAACGGCACTTATC
TGAGCTGCGATATTTACAACACTGAGTACACCCTCGCCTTTGGTGCCGCCAACGGTGTGCCCGAGGAAAACATCAATAAA
GAAAAACAGGTGTCCCAGGCCCAGCGCGACAGCTTCCGTAAGGCCACCAAGGCTGGTGCGAAAATGGTGTTTGGCTCCGA
TGCCGCCATTTACCCCCATGGCGATAACGGCAAGCAGTTCGCCACCATGGTGCAATTTGGCATGACGCCACTGCAGGCGA
TTCAGGCAGCCACCCTCACCAGTGCCGCTTTGCTCAAGCAGCAGGATTTAGGCGAGCTGAAACCCGGGTTTCTGGCCGAT
ATCATCGCGGTAGATGGCAATCCACTGGACAATATCCGCCTGCTGGAGAATGTCAGCTTCGTGATGAAAGATGGCAAGGT
GTTCAAGGGCTGA

Upstream 100 bases:

>100_bases
AAGACTCCAGCCCGGGCGTTGTTGCGCCCGGGTCGCTGAGGTATGCTCGAAAATCTGCCCCCTGCCGGGCCACTTTGCCG
AACAACAACGAGAACATCCG

Downstream 100 bases:

>100_bases
GACCCCTTGTCGCCCTTTCAACACAGGTGCTCAAAATGATTGAGCACCCCGTGTAAATAGGCCTTGTCGCTGCCGCCGAG
ATGGGGTTGTCGGGATAGAT

Product: putative secreted hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRIVELATQGKLDIPAGSELIEL
KGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAVKNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPR
IWSAGHALSITGGHCDDNFSAPEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA
AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYNTEYTLAFGAANGVPEENINK
EKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQFATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLAD
IIAVDGNPLDNIRLLENVSFVMKDGKVFKG

Sequences:

>Translated_430_residues
MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRIVELATQGKLDIPAGSELIEL
KGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAVKNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPR
IWSAGHALSITGGHCDDNFSAPEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA
AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYNTEYTLAFGAANGVPEENINK
EKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQFATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLAD
IIAVDGNPLDNIRLLENVSFVMKDGKVFKG
>Mature_430_residues
MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRIVELATQGKLDIPAGSELIEL
KGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAVKNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPR
IWSAGHALSITGGHCDDNFSAPEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA
AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYNTEYTLAFGAANGVPEENINK
EKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQFATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLAD
IIAVDGNPLDNIRLLENVSFVMKDGKVFKG

Specific function: Unknown

COG id: COG1228

COG function: function code Q; Imidazolonepropionase and related amidohydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO1861 [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322248, Length=331, Percent_Identity=33.5347432024169, Blast_Score=152, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006680 [H]

Pfam domain/function: PF01979 Amidohydro_1 [H]

EC number: NA

Molecular weight: Translated: 45730; Mature: 45730

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRI
CCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECCCCEEECCCCE
VELATQGKLDIPAGSELIELKGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAV
EEEECCCCEECCCCCCEEEECCCCCCCCHHEEEEECCCCCCHHHHHHCCCCCCHHHHHHH
KNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPRIWSAGHALSITGGHCDDNFS
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCCCC
APEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA
CCCHHHHCCCCCCCCEEEEHHHHCCHHCCCCEEEEEEECCCCCCCCHHHHHHHCHHHHHH
AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYN
HHHHHHHCCEEEEEECCCCCHHHHHHHHCCCHHHHHCCCCCCEEEEEEECCCEEEEEEEC
TEYTLAFGAANGVPEENINKEKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQF
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCHHH
ATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLADIIAVDGNPLDNIRLLENVSF
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
VMKDGKVFKG
EEECCEECCC
>Mature Secondary Structure
MRHTSSLSRLSYLSVSLTLSAAMLPFSALAATFISADALLDVRSGKLIDSPLLKIEEGRI
CCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECCCCEEECCCCE
VELATQGKLDIPAGSELIELKGKTLLPGLMDMHVHLGSDAEDNFLESMNYSIPRQTVKAV
EEEECCCCEECCCCCCEEEECCCCCCCCHHEEEEECCCCCCHHHHHHCCCCCCHHHHHHH
KNAKKTLEAGFTTVRDLGDAGYSVIAVRDGINAGEIPGPRIWSAGHALSITGGHCDDNFS
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCCCC
APEMHSVAGGVADGPWAVRAKARENIKYGANTLKICATGGVFSKGTKVGVQQYTEDELRA
CCCHHHHCCCCCCCCEEEEHHHHCCHHCCCCEEEEEEECCCCCCCCHHHHHHHCHHHHHH
AAEEAHQRGLIIAAHAHGTNGIKAAIRAGIDSVEHCSFLDDEAIKLAIKNGTYLSCDIYN
HHHHHHHCCEEEEEECCCCCHHHHHHHHCCCHHHHHCCCCCCEEEEEEECCCEEEEEEEC
TEYTLAFGAANGVPEENINKEKQVSQAQRDSFRKATKAGAKMVFGSDAAIYPHGDNGKQF
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCHHH
ATMVQFGMTPLQAIQAATLTSAALLKQQDLGELKPGFLADIIAVDGNPLDNIRLLENVSF
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
VMKDGKVFKG
EEECCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]