Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773557

Identifier: 119773557

GI number: 119773557

Start: 513399

End: 514343

Strand: Direct

Name: 119773557

Synonym: Sama_0417

Alternate gene names: NA

Gene position: 513399-514343 (Clockwise)

Preceding gene: 119773556

Following gene: 119773559

Centisome position: 11.92

GC content: 54.92

Gene sequence:

>945_bases
ATGGGTATCTATCGCACCCAACTGCCACAACTTGATGGCGGCGTATTCCTCACCGATGGTGGTATCGAGACCACCCTGAT
ATTCCATGAAGGGTTTGAACTGCCTTACTTTGCAGCCTTCGAGCTGCTGAAAACTCCCCAGGGGCGAGATGCCTTAACTC
ACTACTTTGTGACCTACGTGAAATTGGCCGGATTATTTGACACCGGTTTTATTCTCGAAAGCCCAACCTGGCGTGCCAGC
AGTGATTGGGGGGCGCTATTGGGTTACACGAAAGAGACCCTGGCCCAGGCGAACCGTGAGGCGATAGCGCTGCTTGAAGT
CATACGTGAGGCACATTCTGGGCGTCTGCCTGTCGTCGTCAGTGGTTGTATCGGCCCCCGTTTTGACGGCTATCTGCCAG
ACAAAAGCATGACGGCAGAGGACGCCAGGCATTACCACAGCATCCAGATTGAGACCCTCGCCTCCACCTCTGCTGACATG
ATCTGTGCTTTGACCCTGAATCGTGTTGAAGAAGCCATCGGCATAGTGGAAGCCGCGAGGGAAGCGGCCATGCCCGTGGT
GATTTCATTCACCCTCGAGACTGACGGCCGCTTACCCACAGGGCAAAGTCTGGGTGATGCCGTGGTGCAGGTGGATGAAG
CCACCGCAGGCTATGCCGCGTATTTTATGATTAATTGCGCCCATCCGAGTCATCTGGAGACAGTGCCACAAGATGCGCCC
TGGCTTGCAAGGGTGAAAGGATTTCGCGCCAACGCATCGTCCCTAAGCCACGCCGAGCTAAACGACGCCACGACTCTGGA
CGATGGAGATCCCCATCAGTTGGGGCAGCAGTATGCGAGCTTGATGTCGACCAGGCTTAAGGGACTGAATGTGCTGGGAG
GTTGCTGTGGTACAGATCATCGTCATTTGGAACAGATAGCCAAGGCATGCATTAAGCCAAGATGA

Upstream 100 bases:

>100_bases
CATCCGAGGCAATGGACCGCCGACGACCCGTGACGAACAGCCACAGGCAGTGGCGGTTTGAACAGCGGGCTATGACCCTG
TCCATTTCTCAGAGGTGTTT

Downstream 100 bases:

>100_bases
TCGTGGAATGATATAGACAGGGGATTATCTGGTGAGGTTAACCAAGAGATAGAGGCTTGTGGCGATAAGGACGATTAATA
GCAGAGCCAACAACATAGCC

Product: homocysteine S-methyltransferase

Products: NA

Alternate protein names: Homocysteine/Selenocysteine Methylase; Homocysteine S-Methyltransferase Domain-Containing Protein

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MGIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYVKLAGLFDTGFILESPTWRAS
SDWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVVSGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADM
ICALTLNRVEEAIGIVEAAREAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAP
WLARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDHRHLEQIAKACIKPR

Sequences:

>Translated_314_residues
MGIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYVKLAGLFDTGFILESPTWRAS
SDWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVVSGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADM
ICALTLNRVEEAIGIVEAAREAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAP
WLARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDHRHLEQIAKACIKPR
>Mature_313_residues
GIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYVKLAGLFDTGFILESPTWRASS
DWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVVSGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADMI
CALTLNRVEEAIGIVEAAREAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAPW
LARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDHRHLEQIAKACIKPR

Specific function: Unknown

COG id: COG2040

COG function: function code E; Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34112; Mature: 33981

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS50970 HCY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYV
CCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
KLAGLFDTGFILESPTWRASSDWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVV
HHHHHHCCCEEEECCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEE
SGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADMICALTLNRVEEAIGIVEAAR
ECCCCCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHH
EAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAP
HCCCCEEEEEEEECCCCCCCCCCCCHHHEEECCCCCCEEEEEEEECCCCCHHCCCCCCCC
WLARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDH
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH
RHLEQIAKACIKPR
HHHHHHHHHHCCCC
>Mature Secondary Structure 
GIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYV
CCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
KLAGLFDTGFILESPTWRASSDWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVV
HHHHHHCCCEEEECCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEE
SGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADMICALTLNRVEEAIGIVEAAR
ECCCCCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHH
EAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAP
HCCCCEEEEEEEECCCCCCCCCCCCHHHEEECCCCCCEEEEEEEECCCCCHHCCCCCCCC
WLARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDH
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH
RHLEQIAKACIKPR
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA