| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773557
Identifier: 119773557
GI number: 119773557
Start: 513399
End: 514343
Strand: Direct
Name: 119773557
Synonym: Sama_0417
Alternate gene names: NA
Gene position: 513399-514343 (Clockwise)
Preceding gene: 119773556
Following gene: 119773559
Centisome position: 11.92
GC content: 54.92
Gene sequence:
>945_bases ATGGGTATCTATCGCACCCAACTGCCACAACTTGATGGCGGCGTATTCCTCACCGATGGTGGTATCGAGACCACCCTGAT ATTCCATGAAGGGTTTGAACTGCCTTACTTTGCAGCCTTCGAGCTGCTGAAAACTCCCCAGGGGCGAGATGCCTTAACTC ACTACTTTGTGACCTACGTGAAATTGGCCGGATTATTTGACACCGGTTTTATTCTCGAAAGCCCAACCTGGCGTGCCAGC AGTGATTGGGGGGCGCTATTGGGTTACACGAAAGAGACCCTGGCCCAGGCGAACCGTGAGGCGATAGCGCTGCTTGAAGT CATACGTGAGGCACATTCTGGGCGTCTGCCTGTCGTCGTCAGTGGTTGTATCGGCCCCCGTTTTGACGGCTATCTGCCAG ACAAAAGCATGACGGCAGAGGACGCCAGGCATTACCACAGCATCCAGATTGAGACCCTCGCCTCCACCTCTGCTGACATG ATCTGTGCTTTGACCCTGAATCGTGTTGAAGAAGCCATCGGCATAGTGGAAGCCGCGAGGGAAGCGGCCATGCCCGTGGT GATTTCATTCACCCTCGAGACTGACGGCCGCTTACCCACAGGGCAAAGTCTGGGTGATGCCGTGGTGCAGGTGGATGAAG CCACCGCAGGCTATGCCGCGTATTTTATGATTAATTGCGCCCATCCGAGTCATCTGGAGACAGTGCCACAAGATGCGCCC TGGCTTGCAAGGGTGAAAGGATTTCGCGCCAACGCATCGTCCCTAAGCCACGCCGAGCTAAACGACGCCACGACTCTGGA CGATGGAGATCCCCATCAGTTGGGGCAGCAGTATGCGAGCTTGATGTCGACCAGGCTTAAGGGACTGAATGTGCTGGGAG GTTGCTGTGGTACAGATCATCGTCATTTGGAACAGATAGCCAAGGCATGCATTAAGCCAAGATGA
Upstream 100 bases:
>100_bases CATCCGAGGCAATGGACCGCCGACGACCCGTGACGAACAGCCACAGGCAGTGGCGGTTTGAACAGCGGGCTATGACCCTG TCCATTTCTCAGAGGTGTTT
Downstream 100 bases:
>100_bases TCGTGGAATGATATAGACAGGGGATTATCTGGTGAGGTTAACCAAGAGATAGAGGCTTGTGGCGATAAGGACGATTAATA GCAGAGCCAACAACATAGCC
Product: homocysteine S-methyltransferase
Products: NA
Alternate protein names: Homocysteine/Selenocysteine Methylase; Homocysteine S-Methyltransferase Domain-Containing Protein
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MGIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYVKLAGLFDTGFILESPTWRAS SDWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVVSGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADM ICALTLNRVEEAIGIVEAAREAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAP WLARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDHRHLEQIAKACIKPR
Sequences:
>Translated_314_residues MGIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYVKLAGLFDTGFILESPTWRAS SDWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVVSGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADM ICALTLNRVEEAIGIVEAAREAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAP WLARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDHRHLEQIAKACIKPR >Mature_313_residues GIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYVKLAGLFDTGFILESPTWRASS DWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVVSGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADMI CALTLNRVEEAIGIVEAAREAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAPW LARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDHRHLEQIAKACIKPR
Specific function: Unknown
COG id: COG2040
COG function: function code E; Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34112; Mature: 33981
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS50970 HCY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYV CCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH KLAGLFDTGFILESPTWRASSDWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVV HHHHHHCCCEEEECCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEE SGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADMICALTLNRVEEAIGIVEAAR ECCCCCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHH EAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAP HCCCCEEEEEEEECCCCCCCCCCCCHHHEEECCCCCCEEEEEEEECCCCCHHCCCCCCCC WLARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDH HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH RHLEQIAKACIKPR HHHHHHHHHHCCCC >Mature Secondary Structure GIYRTQLPQLDGGVFLTDGGIETTLIFHEGFELPYFAAFELLKTPQGRDALTHYFVTYV CCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH KLAGLFDTGFILESPTWRASSDWGALLGYTKETLAQANREAIALLEVIREAHSGRLPVVV HHHHHHCCCEEEECCCCCCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEE SGCIGPRFDGYLPDKSMTAEDARHYHSIQIETLASTSADMICALTLNRVEEAIGIVEAAR ECCCCCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHH EAAMPVVISFTLETDGRLPTGQSLGDAVVQVDEATAGYAAYFMINCAHPSHLETVPQDAP HCCCCEEEEEEEECCCCCCCCCCCCHHHEEECCCCCCEEEEEEEECCCCCHHCCCCCCCC WLARVKGFRANASSLSHAELNDATTLDDGDPHQLGQQYASLMSTRLKGLNVLGGCCGTDH HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCH RHLEQIAKACIKPR HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA