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The map label for this gene is ybbK [C]

Identifier: 119773556

GI number: 119773556

Start: 512137

End: 513069

Strand: Direct

Name: ybbK [C]

Synonym: Sama_0416

Alternate gene names: 119773556

Gene position: 512137-513069 (Clockwise)

Preceding gene: 119773555

Following gene: 119773557

Centisome position: 11.89

GC content: 51.23

Gene sequence:

>933_bases
ATGCAACTAGCAGTGAACGAAGACCTGATCGTGATGGCGATTTGGGGACTTATCTTCTTTATCTTTATTATCAAGCTGTT
CCAGTCTATTCGTCTGGTGCCAACCAAGTCGGCATATATAGTCGAGCGACTGGGCAAATACCATTCAACTCTGGATGCGG
GCTTTCACGCCTTGATCCCCTTTGTGGATAAAGTTGCCTATGTTCATGATCTGAAAGAGGAGACTATCGACGTGCCACCG
CAGGAGTGTTTCTCCAGTGATGAGGTCAAGGTCGAAGTCGATGGTGTTATCTATATTTCGGTGGTGGATCCGGTGAAAGC
GAGCTATGGCGTGACCGACTATCGCTATGCGGCTATTCAGTTGGCCCAAACCACCACCCGCTCTGTCATTGGTACTCTGG
AGTTGGACCGTACCTTTGAAGAGCGTGACGTTATAAGTGCCAAGGTAGTTGAAGTGCTGGATCAGGCAGGTGCTCTCTGG
GGTATCCGCGTGCATCGTTATGAAATTAAAAATATCCAGCCACCTGAAACCGTGAAAAACGCCATGGAAATGCAGGTGAA
CGCAGAACGTGAGCGCAGGGCCTTGCTGGCAAAGAGTGAGGGTGACAAACAGGCCAAGATTAACCGCTCTGAAGGTATCA
AGGCCGAAACTATCAACCGTTCTGAGGGTGAGATGCAAAAACGCATCAACGAAGCAGAAGGTAAGGCCGAAGAAATCCTC
GCCATCGCCAGGGCCACTGCAGAGTCCATTGAACGCCTGGCCGAAGTGATTTCCGCTCCCGGTGGCCAGAATGCCCTGCG
TTTACAACTGGGTGAGCAGTACCTGACGCAGCTTAAAGGCCTGGGACAGCAGGGCAGCCGTGTTGTGGTACCCGCCAATA
TGGTGAACTTTGATCAGTGGATGGACGCCATGGGCTTGAAAGAGCAGCGTTAA

Upstream 100 bases:

>100_bases
CTCTGTGGTGCCGGCGGAGCTGGCGAAGATGGAAGGCTTTTTCGAAGGCATGGACAAAGTCAGCCATGCGCTGACTGGTA
AGGTATAAGGAGAGCCACAG

Downstream 100 bases:

>100_bases
CCTTAAGCGCGCAGCGTTATAAAGTGAGGCGCTGCGCAGGAAATAACATGAAGGTTCTCCCTGCCCGGGGAGGACCTTTT
TTATTTGGGGCCTATAGTTA

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MQLAVNEDLIVMAIWGLIFFIFIIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALIPFVDKVAYVHDLKEETIDVPP
QECFSSDEVKVEVDGVIYISVVDPVKASYGVTDYRYAAIQLAQTTTRSVIGTLELDRTFEERDVISAKVVEVLDQAGALW
GIRVHRYEIKNIQPPETVKNAMEMQVNAERERRALLAKSEGDKQAKINRSEGIKAETINRSEGEMQKRINEAEGKAEEIL
AIARATAESIERLAEVISAPGGQNALRLQLGEQYLTQLKGLGQQGSRVVVPANMVNFDQWMDAMGLKEQR

Sequences:

>Translated_310_residues
MQLAVNEDLIVMAIWGLIFFIFIIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALIPFVDKVAYVHDLKEETIDVPP
QECFSSDEVKVEVDGVIYISVVDPVKASYGVTDYRYAAIQLAQTTTRSVIGTLELDRTFEERDVISAKVVEVLDQAGALW
GIRVHRYEIKNIQPPETVKNAMEMQVNAERERRALLAKSEGDKQAKINRSEGIKAETINRSEGEMQKRINEAEGKAEEIL
AIARATAESIERLAEVISAPGGQNALRLQLGEQYLTQLKGLGQQGSRVVVPANMVNFDQWMDAMGLKEQR
>Mature_310_residues
MQLAVNEDLIVMAIWGLIFFIFIIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALIPFVDKVAYVHDLKEETIDVPP
QECFSSDEVKVEVDGVIYISVVDPVKASYGVTDYRYAAIQLAQTTTRSVIGTLELDRTFEERDVISAKVVEVLDQAGALW
GIRVHRYEIKNIQPPETVKNAMEMQVNAERERRALLAKSEGDKQAKINRSEGIKAETINRSEGEMQKRINEAEGKAEEIL
AIARATAESIERLAEVISAPGGQNALRLQLGEQYLTQLKGLGQQGSRVVVPANMVNFDQWMDAMGLKEQR

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=262, Percent_Identity=44.2748091603053, Blast_Score=222, Evalue=4e-58,
Organism=Homo sapiens, GI221316744, Length=211, Percent_Identity=32.2274881516588, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI21686995, Length=211, Percent_Identity=32.2274881516588, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI38016911, Length=170, Percent_Identity=32.3529411764706, Blast_Score=92, Evalue=7e-19,
Organism=Escherichia coli, GI1786697, Length=274, Percent_Identity=33.2116788321168, Blast_Score=177, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI32564147, Length=268, Percent_Identity=42.5373134328358, Blast_Score=232, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17569493, Length=226, Percent_Identity=32.3008849557522, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI193209764, Length=225, Percent_Identity=32.4444444444444, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71989948, Length=218, Percent_Identity=34.4036697247706, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17569497, Length=199, Percent_Identity=30.6532663316583, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71989955, Length=193, Percent_Identity=35.2331606217617, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71987612, Length=222, Percent_Identity=31.5315315315315, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI25153583, Length=222, Percent_Identity=31.5315315315315, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI193210507, Length=193, Percent_Identity=31.6062176165803, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17570161, Length=193, Percent_Identity=31.6062176165803, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17569499, Length=222, Percent_Identity=30.6306306306306, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71987621, Length=216, Percent_Identity=32.4074074074074, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI32566490, Length=216, Percent_Identity=29.1666666666667, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17570459, Length=223, Percent_Identity=28.6995515695067, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71989963, Length=135, Percent_Identity=35.5555555555556, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI45550506, Length=265, Percent_Identity=43.7735849056604, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI45556022, Length=214, Percent_Identity=34.5794392523364, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI28573263, Length=191, Percent_Identity=31.9371727748691, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI21356845, Length=199, Percent_Identity=26.1306532663317, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI18860517, Length=221, Percent_Identity=31.2217194570136, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI62484448, Length=222, Percent_Identity=32.4324324324324, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI281365664, Length=222, Percent_Identity=32.4324324324324, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI62484274, Length=222, Percent_Identity=32.4324324324324, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24657857, Length=222, Percent_Identity=32.4324324324324, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI281361631, Length=200, Percent_Identity=25.5, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281361633, Length=200, Percent_Identity=25.5, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281361635, Length=135, Percent_Identity=25.1851851851852, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 34750; Mature: 34750

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLAVNEDLIVMAIWGLIFFIFIIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALIP
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVDKVAYVHDLKEETIDVPPQECFSSDEVKVEVDGVIYISVVDPVKASYGVTDYRYAAIQ
HHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCEEEEEEECCHHHHCCCCHHHHHHHH
LAQTTTRSVIGTLELDRTFEERDVISAKVVEVLDQAGALWGIRVHRYEIKNIQPPETVKN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHH
AMEMQVNAERERRALLAKSEGDKQAKINRSEGIKAETINRSEGEMQKRINEAEGKAEEIL
HHHHHHCHHHHHHHHHHCCCCCCCHHCCCCCCCEEEECCCCHHHHHHHHHHHCCHHHHHH
AIARATAESIERLAEVISAPGGQNALRLQLGEQYLTQLKGLGQQGSRVVVPANMVNFDQW
HHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEEECCHHCHHHH
MDAMGLKEQR
HHHCCCCCCC
>Mature Secondary Structure
MQLAVNEDLIVMAIWGLIFFIFIIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHALIP
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVDKVAYVHDLKEETIDVPPQECFSSDEVKVEVDGVIYISVVDPVKASYGVTDYRYAAIQ
HHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCEEEEEEECCHHHHCCCCHHHHHHHH
LAQTTTRSVIGTLELDRTFEERDVISAKVVEVLDQAGALWGIRVHRYEIKNIQPPETVKN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHH
AMEMQVNAERERRALLAKSEGDKQAKINRSEGIKAETINRSEGEMQKRINEAEGKAEEIL
HHHHHHCHHHHHHHHHHCCCCCCCHHCCCCCCCEEEECCCCHHHHHHHHHHHCCHHHHHH
AIARATAESIERLAEVISAPGGQNALRLQLGEQYLTQLKGLGQQGSRVVVPANMVNFDQW
HHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEEECCHHCHHHH
MDAMGLKEQR
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]