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The map label for this gene is ybbK [C]

Identifier: 119773555

GI number: 119773555

Start: 511210

End: 512124

Strand: Direct

Name: ybbK [C]

Synonym: Sama_0415

Alternate gene names: 119773555

Gene position: 511210-512124 (Clockwise)

Preceding gene: 119773554

Following gene: 119773556

Centisome position: 11.87

GC content: 52.24

Gene sequence:

>915_bases
ATGTTGCTGTTAACCATAGCTTTTCTTTTTATTCTTTTCATTTTGTACAAGTTGATGCTCATCGTTCAAATGCGGGAAGT
GGCCGTGATTGAGCGTCTCGGTAAATTTCGCACTGTGCTGGAGCCGGGGTTTCACTTCCTGATCCCCTTTGTCGATCGGG
TTGCATACCGCCATGACACCCGTGAGCAAGTGTTGGATGTACCGGCCCAAAGCTGTATCTCCAAGGACAATACCCAGCTG
GAGGTTGATGGTCTGGTGTATCTCAAGGTGATGGACGGCAAGCTGGCGAGCTACGGGATTGAAGATTATCGCCTTGCCGC
GGTAAACCTGGCTCAAACCACCATGAGATCGGAAATTGGTAAGCTCACCCTGAGCGAAACCTTTTCTGAGCGTGACCGCC
TGAACGAGTCCATAGTGCGCGAAATCGATAAGGCCTCTGAGCCTTGGGGCATCAAGGTGTTGCGCTACGAGATTAAAAAC
ATCACACCTTCAAGGCATGTGATCCACACCCTTGAGAAACAGATGGAAGCCGAGCGTCGCAAGCGCGCCGAGATTACTCT
GGCCAATGCCGAAAAGGCGGCGATGATCAACCTCTCAGAAGGTGAGCGCCAGGAAGCTATTAACCTTTCGGAAGGGGAAA
AACAGAAGCGTATCAACGAGGCCAAGGGCACAGCGGCTGAAATCGCCATCATCGCCCGCGCCAAAGCCGAGGGCATGGGC
ATGGTATCCAGTGCGCTGGCGGTGCAGGGCGGAACCAAAGCCATGAATATGCAGCTCAAAGAGCAGTTTATTAAACAGAT
AGGCGAAGTGATGAAGAATGCCGAAGTCTCTGTGGTGCCGGCGGAGCTGGCGAAGATGGAAGGCTTTTTCGAAGGCATGG
ACAAAGTCAGCCATGCGCTGACTGGTAAGGTATAA

Upstream 100 bases:

>100_bases
GAGTGGCACCCAGGTACGGGTGATCTGCAGGGAAAACATTTCTTTGATTGTTGAGGCGCTTCCTGCGCAGCACATCGTCT
GATTTTGCAAGGAGGGAACC

Downstream 100 bases:

>100_bases
GGAGAGCCACAGATGCAACTAGCAGTGAACGAAGACCTGATCGTGATGGCGATTTGGGGACTTATCTTCTTTATCTTTAT
TATCAAGCTGTTCCAGTCTA

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLLLTIAFLFILFILYKLMLIVQMREVAVIERLGKFRTVLEPGFHFLIPFVDRVAYRHDTREQVLDVPAQSCISKDNTQL
EVDGLVYLKVMDGKLASYGIEDYRLAAVNLAQTTMRSEIGKLTLSETFSERDRLNESIVREIDKASEPWGIKVLRYEIKN
ITPSRHVIHTLEKQMEAERRKRAEITLANAEKAAMINLSEGERQEAINLSEGEKQKRINEAKGTAAEIAIIARAKAEGMG
MVSSALAVQGGTKAMNMQLKEQFIKQIGEVMKNAEVSVVPAELAKMEGFFEGMDKVSHALTGKV

Sequences:

>Translated_304_residues
MLLLTIAFLFILFILYKLMLIVQMREVAVIERLGKFRTVLEPGFHFLIPFVDRVAYRHDTREQVLDVPAQSCISKDNTQL
EVDGLVYLKVMDGKLASYGIEDYRLAAVNLAQTTMRSEIGKLTLSETFSERDRLNESIVREIDKASEPWGIKVLRYEIKN
ITPSRHVIHTLEKQMEAERRKRAEITLANAEKAAMINLSEGERQEAINLSEGEKQKRINEAKGTAAEIAIIARAKAEGMG
MVSSALAVQGGTKAMNMQLKEQFIKQIGEVMKNAEVSVVPAELAKMEGFFEGMDKVSHALTGKV
>Mature_304_residues
MLLLTIAFLFILFILYKLMLIVQMREVAVIERLGKFRTVLEPGFHFLIPFVDRVAYRHDTREQVLDVPAQSCISKDNTQL
EVDGLVYLKVMDGKLASYGIEDYRLAAVNLAQTTMRSEIGKLTLSETFSERDRLNESIVREIDKASEPWGIKVLRYEIKN
ITPSRHVIHTLEKQMEAERRKRAEITLANAEKAAMINLSEGERQEAINLSEGEKQKRINEAKGTAAEIAIIARAKAEGMG
MVSSALAVQGGTKAMNMQLKEQFIKQIGEVMKNAEVSVVPAELAKMEGFFEGMDKVSHALTGKV

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=284, Percent_Identity=40.4929577464789, Blast_Score=216, Evalue=2e-56,
Organism=Homo sapiens, GI38016911, Length=169, Percent_Identity=33.1360946745562, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI221316744, Length=166, Percent_Identity=31.3253012048193, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI21686995, Length=166, Percent_Identity=31.3253012048193, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI7657615, Length=187, Percent_Identity=29.4117647058824, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI20149563, Length=160, Percent_Identity=30, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1786697, Length=299, Percent_Identity=35.1170568561873, Blast_Score=184, Evalue=9e-48,
Organism=Caenorhabditis elegans, GI32564147, Length=266, Percent_Identity=40.9774436090226, Blast_Score=218, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI17569493, Length=193, Percent_Identity=33.160621761658, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI193209764, Length=193, Percent_Identity=33.160621761658, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71987612, Length=167, Percent_Identity=34.7305389221557, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI25153583, Length=167, Percent_Identity=34.7305389221557, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17569499, Length=166, Percent_Identity=34.3373493975904, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71987621, Length=167, Percent_Identity=34.7305389221557, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71989948, Length=151, Percent_Identity=33.7748344370861, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17570459, Length=224, Percent_Identity=32.1428571428571, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI71989955, Length=165, Percent_Identity=32.7272727272727, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI32566490, Length=149, Percent_Identity=34.8993288590604, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI193210507, Length=163, Percent_Identity=33.1288343558282, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17570161, Length=163, Percent_Identity=33.1288343558282, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17569497, Length=197, Percent_Identity=28.9340101522843, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71989963, Length=122, Percent_Identity=32.7868852459016, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI45550506, Length=272, Percent_Identity=41.1764705882353, Blast_Score=214, Evalue=8e-56,
Organism=Drosophila melanogaster, GI45556022, Length=164, Percent_Identity=35.3658536585366, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24657857, Length=161, Percent_Identity=36.0248447204969, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI281365664, Length=161, Percent_Identity=36.0248447204969, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI62484448, Length=161, Percent_Identity=36.0248447204969, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI62484274, Length=161, Percent_Identity=36.0248447204969, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI18860517, Length=164, Percent_Identity=35.3658536585366, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21356845, Length=200, Percent_Identity=30, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28573263, Length=206, Percent_Identity=31.5533980582524, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281361631, Length=201, Percent_Identity=28.8557213930348, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI281361633, Length=201, Percent_Identity=28.8557213930348, Blast_Score=81, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 34159; Mature: 34159

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLTIAFLFILFILYKLMLIVQMREVAVIERLGKFRTVLEPGFHFLIPFVDRVAYRHDT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCH
REQVLDVPAQSCISKDNTQLEVDGLVYLKVMDGKLASYGIEDYRLAAVNLAQTTMRSEIG
HHHHHHCCHHHHCCCCCCEEEECCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHH
KLTLSETFSERDRLNESIVREIDKASEPWGIKVLRYEIKNITPSRHVIHTLEKQMEAERR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEHHCCCCHHHHHHHHHHHHHHHHH
KRAEITLANAEKAAMINLSEGERQEAINLSEGEKQKRINEAKGTAAEIAIIARAKAEGMG
HHHEEEEECCCCEEEEECCCCCHHHCCCCCCCHHHHHHHHHCCCHHHHHEEEHHHHCCCH
MVSSALAVQGGTKAMNMQLKEQFIKQIGEVMKNAEVSVVPAELAKMEGFFEGMDKVSHAL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHH
TGKV
CCCC
>Mature Secondary Structure
MLLLTIAFLFILFILYKLMLIVQMREVAVIERLGKFRTVLEPGFHFLIPFVDRVAYRHDT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCH
REQVLDVPAQSCISKDNTQLEVDGLVYLKVMDGKLASYGIEDYRLAAVNLAQTTMRSEIG
HHHHHHCCHHHHCCCCCCEEEECCEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHH
KLTLSETFSERDRLNESIVREIDKASEPWGIKVLRYEIKNITPSRHVIHTLEKQMEAERR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEHHCCCCHHHHHHHHHHHHHHHHH
KRAEITLANAEKAAMINLSEGERQEAINLSEGEKQKRINEAKGTAAEIAIIARAKAEGMG
HHHEEEEECCCCEEEEECCCCCHHHCCCCCCCHHHHHHHHHCCCHHHHHEEEHHHHCCCH
MVSSALAVQGGTKAMNMQLKEQFIKQIGEVMKNAEVSVVPAELAKMEGFFEGMDKVSHAL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHH
TGKV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]