| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773554
Identifier: 119773554
GI number: 119773554
Start: 510724
End: 511191
Strand: Direct
Name: 119773554
Synonym: Sama_0414
Alternate gene names: NA
Gene position: 510724-511191 (Clockwise)
Preceding gene: 119773552
Following gene: 119773555
Centisome position: 11.86
GC content: 56.62
Gene sequence:
>468_bases ATGGAGTTTTCTAATCCGGTACTGATATGGGCGGGGATTGGCGTAGTGCTGATGCTGGCCGAAGTCATAGTGCCAGGTGG CATAGTGATACTGCTCGGGGCTGCGTGCTTGGTGGTTTCGGGGGCGTTGGGACTGGGCCTGGTGGACGGTTTCATCCAGA GCATGACGCTGTGGTTTATCGCGTCCATGGTATTGCTGCTTGGCTTTCGTCATATTACCCAGCGTCTGGTGGGGGGAGAC TCCCATGTAGACAACACAGATGAGGCGCTGGATATCTATAACCAGACTGCGCTGGTCAAGGCCGACATAGGGCCGGGTGA AAAGGCCGGCAGGGTGGAGTTTCAGGGAGCCGATTGGCCTGCTCTGGGTGATGGCACTCTGATCCCGAGTGGCACCCAGG TACGGGTGATCTGCAGGGAAAACATTTCTTTGATTGTTGAGGCGCTTCCTGCGCAGCACATCGTCTGA
Upstream 100 bases:
>100_bases TTTTATCCACCGGCAAAAAGTCCTGGTTGACATAATATGTCGCATTGCGACAAAACTGCTGTTATAGTCGGCACAAGGAT GCTCTGCATTGGAGGGGGAG
Downstream 100 bases:
>100_bases TTTTGCAAGGAGGGAACCATGTTGCTGTTAACCATAGCTTTTCTTTTTATTCTTTTCATTTTGTACAAGTTGATGCTCAT CGTTCAAATGCGGGAAGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 155; Mature: 155
Protein sequence:
>155_residues MEFSNPVLIWAGIGVVLMLAEVIVPGGIVILLGAACLVVSGALGLGLVDGFIQSMTLWFIASMVLLLGFRHITQRLVGGD SHVDNTDEALDIYNQTALVKADIGPGEKAGRVEFQGADWPALGDGTLIPSGTQVRVICRENISLIVEALPAQHIV
Sequences:
>Translated_155_residues MEFSNPVLIWAGIGVVLMLAEVIVPGGIVILLGAACLVVSGALGLGLVDGFIQSMTLWFIASMVLLLGFRHITQRLVGGD SHVDNTDEALDIYNQTALVKADIGPGEKAGRVEFQGADWPALGDGTLIPSGTQVRVICRENISLIVEALPAQHIV >Mature_155_residues MEFSNPVLIWAGIGVVLMLAEVIVPGGIVILLGAACLVVSGALGLGLVDGFIQSMTLWFIASMVLLLGFRHITQRLVGGD SHVDNTDEALDIYNQTALVKADIGPGEKAGRVEFQGADWPALGDGTLIPSGTQVRVICRENISLIVEALPAQHIV
Specific function: Unknown
COG id: COG1585
COG function: function code OU; Membrane protein implicated in regulation of membrane protease activity
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16328; Mature: 16328
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFSNPVLIWAGIGVVLMLAEVIVPGGIVILLGAACLVVSGALGLGLVDGFIQSMTLWFI CCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASMVLLLGFRHITQRLVGGDSHVDNTDEALDIYNQTALVKADIGPGEKAGRVEFQGADWP HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCC ALGDGTLIPSGTQVRVICRENISLIVEALPAQHIV CCCCCCCCCCCCEEEEEECCCHHHHHHHCCHHCCC >Mature Secondary Structure MEFSNPVLIWAGIGVVLMLAEVIVPGGIVILLGAACLVVSGALGLGLVDGFIQSMTLWFI CCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASMVLLLGFRHITQRLVGGDSHVDNTDEALDIYNQTALVKADIGPGEKAGRVEFQGADWP HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCC ALGDGTLIPSGTQVRVICRENISLIVEALPAQHIV CCCCCCCCCCCCEEEEEECCCHHHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA