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The map label for this gene is ygiD [H]

Identifier: 119773549

GI number: 119773549

Start: 505765

End: 506538

Strand: Reverse

Name: ygiD [H]

Synonym: Sama_0409

Alternate gene names: 119773549

Gene position: 506538-505765 (Counterclockwise)

Preceding gene: 119773551

Following gene: 119773548

Centisome position: 11.76

GC content: 57.75

Gene sequence:

>774_bases
ATGTCAACCTTACCCATGCCAGCCCTTTTTCTTGGCCACGGCAGCCCAATGAATGCGCTCGAACATACTCCCATCAGCCA
AGCCTGGCGCGAGCTTGGTCAAACCCTGCCCAGACCCAGGGCCATATTGATGATCTCGGCCCACTGGAACACCCGTGGCA
CTTTGGTATCGGCGGCCACCCAGCCCGAAACCATTCACGACTTCGGCGGTTTTCCCGATGCCCTCTATGCCATGGAATAT
CCCGCACCAGGTGCGCCTGAGCTGGCGGCGCAAATAGCTGCGCTGTTACCCAGCAGCCGCCTGGATCACAGCCGCGGTTT
GGACCACGGTGCCTGGTCACTCCTGGTTCATCTATACCCTGAGGCAAATATTCCGGTATTGCAACTGAGCCTGGACATGC
AACTCACGCCAGAACAAGAGTATGGCACAGGACGGGCATTACGGACGTTGAGAGAGCAAGGCGTGCTGATTATCGGTTCG
GGCAATACTGTGCATAACCTGCGGGCGCTGGTTCCCGGCGACGGTGCCTATCCCTGGGCATCAGCTTTCAACGAAACAAT
AGGCCAACGGCTGCTGGATAAGGCCGATGACGCCATATTGGATTACACCCGTCTGGTGAATGCCGATACCGCCCGGCTCT
GCCATCCTACAGACGAGCACTTAAGGCCGCTGTTTTATCTGCTGGGCGCAGGCTACCCGGATGAGCCCAGAACCCTGTTC
AACAACCACTTGACCATGGGTGCCATCAGCATGCTGAGCCTGAAACTGGGCTGA

Upstream 100 bases:

>100_bases
TATTGTTCGATTTTCTGAGCAGTTTTGACGAGAATTTTGCAATTTTCCTGATGGATGTGCCGGACTATGCTGGACCGACA
AACCAATCAATGGAGTCCCA

Downstream 100 bases:

>100_bases
TGGGAAGTCAGCCTCCTTGCCCGGGCGCGGCACAGGCATTCTATTTCCCGTCGCCAACAGGCAAAATGACAGGATATTTG
AAGCAGATGTGGGCACCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSTLPMPALFLGHGSPMNALEHTPISQAWRELGQTLPRPRAILMISAHWNTRGTLVSAATQPETIHDFGGFPDALYAMEY
PAPGAPELAAQIAALLPSSRLDHSRGLDHGAWSLLVHLYPEANIPVLQLSLDMQLTPEQEYGTGRALRTLREQGVLIIGS
GNTVHNLRALVPGDGAYPWASAFNETIGQRLLDKADDAILDYTRLVNADTARLCHPTDEHLRPLFYLLGAGYPDEPRTLF
NNHLTMGAISMLSLKLG

Sequences:

>Translated_257_residues
MSTLPMPALFLGHGSPMNALEHTPISQAWRELGQTLPRPRAILMISAHWNTRGTLVSAATQPETIHDFGGFPDALYAMEY
PAPGAPELAAQIAALLPSSRLDHSRGLDHGAWSLLVHLYPEANIPVLQLSLDMQLTPEQEYGTGRALRTLREQGVLIIGS
GNTVHNLRALVPGDGAYPWASAFNETIGQRLLDKADDAILDYTRLVNADTARLCHPTDEHLRPLFYLLGAGYPDEPRTLF
NNHLTMGAISMLSLKLG
>Mature_256_residues
STLPMPALFLGHGSPMNALEHTPISQAWRELGQTLPRPRAILMISAHWNTRGTLVSAATQPETIHDFGGFPDALYAMEYP
APGAPELAAQIAALLPSSRLDHSRGLDHGAWSLLVHLYPEANIPVLQLSLDMQLTPEQEYGTGRALRTLREQGVLIIGSG
NTVHNLRALVPGDGAYPWASAFNETIGQRLLDKADDAILDYTRLVNADTARLCHPTDEHLRPLFYLLGAGYPDEPRTLFN
NHLTMGAISMLSLKLG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=46.1832061068702, Blast_Score=234, Evalue=5e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28068; Mature: 27937

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLPMPALFLGHGSPMNALEHTPISQAWRELGQTLPRPRAILMISAHWNTRGTLVSAAT
CCCCCCCEEEECCCCCCCHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEECCC
QPETIHDFGGFPDALYAMEYPAPGAPELAAQIAALLPSSRLDHSRGLDHGAWSLLVHLYP
CCCHHHHCCCCCHHHEEECCCCCCCHHHHHHHHHHCCCHHCHHHCCCCHHHHEEEEEECC
EANIPVLQLSLDMQLTPEQEYGTGRALRTLREQGVLIIGSGNTVHNLRALVPGDGAYPWA
CCCCCEEEEEECCEECCCHHCCCHHHHHHHHHCCEEEEECCCCEEEEEEECCCCCCCHHH
SAFNETIGQRLLDKADDAILDYTRLVNADTARLCHPTDEHLRPLFYLLGAGYPDEPRTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCHHHH
NNHLTMGAISMLSLKLG
HCCHHHHHHHHHHEECC
>Mature Secondary Structure 
STLPMPALFLGHGSPMNALEHTPISQAWRELGQTLPRPRAILMISAHWNTRGTLVSAAT
CCCCCCEEEECCCCCCCHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEECCC
QPETIHDFGGFPDALYAMEYPAPGAPELAAQIAALLPSSRLDHSRGLDHGAWSLLVHLYP
CCCHHHHCCCCCHHHEEECCCCCCCHHHHHHHHHHCCCHHCHHHCCCCHHHHEEEEEECC
EANIPVLQLSLDMQLTPEQEYGTGRALRTLREQGVLIIGSGNTVHNLRALVPGDGAYPWA
CCCCCEEEEEECCEECCCHHCCCHHHHHHHHHCCEEEEECCCCEEEEEEECCCCCCCHHH
SAFNETIGQRLLDKADDAILDYTRLVNADTARLCHPTDEHLRPLFYLLGAGYPDEPRTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCHHHH
NNHLTMGAISMLSLKLG
HCCHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]