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The map label for this gene is yggB [C]

Identifier: 119773548

GI number: 119773548

Start: 504775

End: 505623

Strand: Reverse

Name: yggB [C]

Synonym: Sama_0408

Alternate gene names: 119773548

Gene position: 505623-504775 (Counterclockwise)

Preceding gene: 119773549

Following gene: 119773546

Centisome position: 11.74

GC content: 52.41

Gene sequence:

>849_bases
ATGAATAACACAGGTCTGGAGCAGGGACTGCAACAGGAATTGGCTCAGCTGCAAAACGTCTATGACCTTATCACCGAGTT
TTTGGTGCAGTACAGTTTTCAGCTGATTGGCGCCCTGCTTATCTTTTTGCTCGGCCTCTGGCTTGCTGCCAAGGTCGCCG
GCATGGTCAATAAACAACTGGAAAAGTACCGGGTCGATATCACGCTTGCCAGCTTTGTGACGCATCTTGTACGCATTCTG
ATTATCATCATGGTGGCCATAGTCGCCCTGGGTAAGCTTGGGATCAGCGTGACCCCAATGGTCGCCGCGATAGGCGCTGC
TTCACTTGGCGCCGGTCTGGCCATTCAGGGGATGCTGTCAAACTATGCCGCCGGTATCACCATCATAGTAACCCGCCCCT
TTGCCGTAGGTAACACCATCAGCGTGCGCGGCGTGACCGGGGTGGTGAAAGACATCTTGCTGGGGATGACCATACTGACC
AATGAAGAAGGCGAACAGATCAGCATTCCCAACAAGCACATCGTCGGAGAAATCCTGCACAACTCCTTTGAATACAAGCT
GGTAGAAAGCCAATTCAACATCTGCTACGACCAGGATGCCGATGCCGTTATTGCCTTGGTGAACAAGGCACTGCTTGGCA
GCGGAAAGCTTCATGCCGAGCAGCCTCCCCAGGTGGGGATTAACGGGTTTAACAATCTGGGTATTGAGATTGGCCTTAGA
TACTGGCTGCCCACCCAGAGCTATTTTCAGGACAAATACATCACCCATCAGGCCATTCATGGGGCACTGAAAGCCGCCGC
CATCAAGATACCGTCACTTAGCAGGGATGCTCATCTTCTCGGTGAATAA

Upstream 100 bases:

>100_bases
TATTTCCCGTCGCCAACAGGCAAAATGACAGGATATTTGAAGCAGATGTGGGCACCTGCGGGTGAATTCATCGGCAAATT
AAGGAAGCCGCGGAGGAAAT

Downstream 100 bases:

>100_bases
GCTGGTCCGGGGCGCTCTTTGAGCGCCTCACAGCCCCCGCTGCCATTCCTGCCTGAGTGGCACAGCGCCCGGAGAATCCA
ACGCCAAACGCACCTGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNNTGLEQGLQQELAQLQNVYDLITEFLVQYSFQLIGALLIFLLGLWLAAKVAGMVNKQLEKYRVDITLASFVTHLVRIL
IIIMVAIVALGKLGISVTPMVAAIGAASLGAGLAIQGMLSNYAAGITIIVTRPFAVGNTISVRGVTGVVKDILLGMTILT
NEEGEQISIPNKHIVGEILHNSFEYKLVESQFNICYDQDADAVIALVNKALLGSGKLHAEQPPQVGINGFNNLGIEIGLR
YWLPTQSYFQDKYITHQAIHGALKAAAIKIPSLSRDAHLLGE

Sequences:

>Translated_282_residues
MNNTGLEQGLQQELAQLQNVYDLITEFLVQYSFQLIGALLIFLLGLWLAAKVAGMVNKQLEKYRVDITLASFVTHLVRIL
IIIMVAIVALGKLGISVTPMVAAIGAASLGAGLAIQGMLSNYAAGITIIVTRPFAVGNTISVRGVTGVVKDILLGMTILT
NEEGEQISIPNKHIVGEILHNSFEYKLVESQFNICYDQDADAVIALVNKALLGSGKLHAEQPPQVGINGFNNLGIEIGLR
YWLPTQSYFQDKYITHQAIHGALKAAAIKIPSLSRDAHLLGE
>Mature_282_residues
MNNTGLEQGLQQELAQLQNVYDLITEFLVQYSFQLIGALLIFLLGLWLAAKVAGMVNKQLEKYRVDITLASFVTHLVRIL
IIIMVAIVALGKLGISVTPMVAAIGAASLGAGLAIQGMLSNYAAGITIIVTRPFAVGNTISVRGVTGVVKDILLGMTILT
NEEGEQISIPNKHIVGEILHNSFEYKLVESQFNICYDQDADAVIALVNKALLGSGKLHAEQPPQVGINGFNNLGIEIGLR
YWLPTQSYFQDKYITHQAIHGALKAAAIKIPSLSRDAHLLGE

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=255, Percent_Identity=30.1960784313725, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786670, Length=174, Percent_Identity=25.8620689655172, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30473; Mature: 30473

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTGLEQGLQQELAQLQNVYDLITEFLVQYSFQLIGALLIFLLGLWLAAKVAGMVNKQL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKYRVDITLASFVTHLVRILIIIMVAIVALGKLGISVTPMVAAIGAASLGAGLAIQGMLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
NYAAGITIIVTRPFAVGNTISVRGVTGVVKDILLGMTILTNEEGEQISIPNKHIVGEILH
HHCCCEEEEEECCEECCCEEEECHHHHHHHHHHHHHHHEECCCCCEEECCCHHHHHHHHH
NSFEYKLVESQFNICYDQDADAVIALVNKALLGSGKLHAEQPPQVGINGFNNLGIEIGLR
CCHHEEEHHHHHCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEE
YWLPTQSYFQDKYITHQAIHGALKAAAIKIPSLSRDAHLLGE
EECCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCC
>Mature Secondary Structure
MNNTGLEQGLQQELAQLQNVYDLITEFLVQYSFQLIGALLIFLLGLWLAAKVAGMVNKQL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKYRVDITLASFVTHLVRILIIIMVAIVALGKLGISVTPMVAAIGAASLGAGLAIQGMLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
NYAAGITIIVTRPFAVGNTISVRGVTGVVKDILLGMTILTNEEGEQISIPNKHIVGEILH
HHCCCEEEEEECCEECCCEEEECHHHHHHHHHHHHHHHEECCCCCEEECCCHHHHHHHHH
NSFEYKLVESQFNICYDQDADAVIALVNKALLGSGKLHAEQPPQVGINGFNNLGIEIGLR
CCHHEEEHHHHHCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEE
YWLPTQSYFQDKYITHQAIHGALKAAAIKIPSLSRDAHLLGE
EECCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]