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The map label for this gene is tapC [H]

Identifier: 119773509

GI number: 119773509

Start: 444884

End: 446143

Strand: Reverse

Name: tapC [H]

Synonym: Sama_0368

Alternate gene names: 119773509

Gene position: 446143-444884 (Counterclockwise)

Preceding gene: 119773510

Following gene: 119773508

Centisome position: 10.36

GC content: 48.89

Gene sequence:

>1260_bases
ATGGCCACAGCCGTCGCAAACAAATCCAAAAAGCAGACACAAAAGCTAGCTCCCAAGGTCTATAACTTTGAATGGAAGGG
CTTAAACCGAGATGGCAAAAAATCCAGCGGTGAGCTCAGGGGCGCGTCTGTTGCCGAAATTAAAACCCTTCTTAAAAATC
AGGGTATAAACCCCAAGGTAGTTCGTAAGAAGTCTGATGGCCTTTTTGGTGCCAGCAATAAAAAGATCAATGCGATGGAC
ATCGCCATGGTCACCCGCCAAATAGCCACCATGCTGATGGCAGGTGTGCCCTTGGTGACCACCATAGAAATCCTCGGTAA
AGGCCATGAAAAGCCCAAGATGAGAGAATTGCTTGGCACCATTCTTAACGACATTCAGGCAGGTATTCCACTCTCTGATG
CACTGCGGCCCCACAGAATTTACTTTGATGACTTATACGTAGACCTGGTGGCCGCCGGTGAGCACTCGGGTTCACTGGAT
ACTGTTTTTGACAGGATTGCAACTTATAGAGAAAAAGCAGAAGCCCTGAAGTCCAAAATCAAAAAGGCCATGTTTTATCC
CGCTGCGGTCGTGGTGGTTGCGATTGCTGTTACCACCTTGCTGCTGCTCTTCGTAGTACCCCAGTTTGAAGAAATTTTTA
CCAGTTTCGGTGCTGAACTTCCTGCATTCACCCAGCTCATTATCAATATCTCACGATTTCTGCAGTCATCTTGGTATTTC
TTCCTCACCGCCATCGTTGGCTCTATCTGGCTCTATGTCCGCGCCCACCGGAATTCTCAAGCAGTACGCGATAGGCAAGA
CGAGTTTGTGCTTAAAATCCCTGTGATTGGAGAAATCTTACACAAGGCTGCCATGGCCCGCTTTGCCCGCACCCTGGCGA
CCACCTTTGCAGCTGGTGTTCCCCTGATTGATGGCCTGGAGTCTGCGGCAGGTGCTTCTGGTAATGCCGTTTACCGTAAA
GCACTTTTGCGAATTCGCACCGAAGTGATGGCCGGTATGCAAATGAACGTGGCCATGCGTACCGTTAACCTCTTCCCGGA
TATGCTCATTCAAATGGTGATGATTGGTGAAGAGTCAGGTTCGCTGGATAATATGCTCAACAAAATTGCCAACATCTATG
AGATGCAGGTGGATGATGCCGTTGATGGCCTCTCGAGCCTGATTGAACCCATTATGATGGTGGTTATCGGTACCCTTGTC
GGCGGCCTGATTGTGGGTATGTATCTGCCTATCTTCCAGATGGGTAATGTGGTTGGCTAA

Upstream 100 bases:

>100_bases
TGCAGAGGTTAACCGCGTGACCAGTTTTTAACTGCCGCATCTAGAATCTAGAAGCTAGAATCAAGTAACTCGCAACGCGA
GCGCTCTAAAGGAAATAGAT

Downstream 100 bases:

>100_bases
TAGCACTATTTTAAAACTTATAACAATTTTAACAGATGACTGAATTTATCTCCCTAATGAGCCAGTTTCCCTGGCTCTTT
ATTTTGCTCGCATTCCTGTT

Product: type IV pilus biogenesis protein PilC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MATAVANKSKKQTQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINPKVVRKKSDGLFGASNKKINAMD
IAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLD
TVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYF
FLTAIVGSIWLYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRK
ALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLV
GGLIVGMYLPIFQMGNVVG

Sequences:

>Translated_419_residues
MATAVANKSKKQTQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINPKVVRKKSDGLFGASNKKINAMD
IAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLD
TVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYF
FLTAIVGSIWLYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRK
ALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLV
GGLIVGMYLPIFQMGNVVG
>Mature_418_residues
ATAVANKSKKQTQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINPKVVRKKSDGLFGASNKKINAMDI
AMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLDT
VFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYFF
LTAIVGSIWLYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRKA
LLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLVG
GLIVGMYLPIFQMGNVVG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=402, Percent_Identity=27.363184079602, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI1786295, Length=407, Percent_Identity=28.7469287469287, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45947; Mature: 45816

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAVANKSKKQTQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINPKV
CCCCCCCCHHHHHHHHCCHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
VRKKSDGLFGASNKKINAMDIAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGT
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
ILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALKSKI
HHHHHHCCCCHHHCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KKAMFYPAAVVVVAIAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FLTAIVGSIWLYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGV
HHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
PLIDGLESAAGASGNAVYRKALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESG
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLVGGLIVGMYLPIFQMGNVVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ATAVANKSKKQTQKLAPKVYNFEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINPKV
CCCCCCCHHHHHHHHCCHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
VRKKSDGLFGASNKKINAMDIAMVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGT
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
ILNDIQAGIPLSDALRPHRIYFDDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALKSKI
HHHHHHCCCCHHHCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KKAMFYPAAVVVVAIAVTTLLLLFVVPQFEEIFTSFGAELPAFTQLIINISRFLQSSWYF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FLTAIVGSIWLYVRAHRNSQAVRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGV
HHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
PLIDGLESAAGASGNAVYRKALLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESG
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIGTLVGGLIVGMYLPIFQMGNVVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]