Click here to switch to the map view.

The map label for this gene is tapB [H]

Identifier: 119773510

GI number: 119773510

Start: 446213

End: 447919

Strand: Reverse

Name: tapB [H]

Synonym: Sama_0369

Alternate gene names: 119773510

Gene position: 447919-446213 (Counterclockwise)

Preceding gene: 119773511

Following gene: 119773509

Centisome position: 10.4

GC content: 50.15

Gene sequence:

>1707_bases
ATGCCAACAACCGGCTTGCACTTAGGATTGTCGACGCTGTTTTTACGTAAAGGACTGCTCACAGAAGAGCAGCTCTCCGA
AGCAGTATCCCAATCACGCAAAAATCGGCATTCATTGGTCACTACTCTTGTGATCAGTAAGCTAATATCTGCAAGAGAAA
TTGCAGAGCTTTGTTATGAAGAATACGGCACGCCGCTTCTGGATTTAGCCGAGTTTGATGTTTCCAGCATTCCCGAAGAT
TTTCTCAATAAAAAGCTCATCGAGAAGCACCGCTGCCTGCCACTGTTTAAGCGTGGCAACCGGCTGTATATAGGTACATC
TGACCCCACCAACATTCCCGCACTGGAAGATTTTCAGTTTTCAGCAGGTTTGCACGCCGAAGCTATTTTGGTGGAAGACG
ATAAGCTTGCCAAAGCGCTGGAGAAAATCCTTGAAGAAGACATCAGCGCTCTGGATTTGGGGGGCTTGGACGAAGAAGCT
CTTGCTGGCATTGAAGTTACTGATACCGACAAGCGCCCGGAAAATGATAATGAAGGCGCCGACGATGCCCCAATAGTTAT
CTATATCAACAAGATTTTGACAGATGCTATTCGCCGCGGCGCATCAGATTTGCACTTTGAACCTTATGAGAAGCGCTACC
GCATCCGTTTTCGTATCGATGGCATTTTGCATGAAGTGTCTGAGCCGCCGATTAACCTCTCAGGGCGCATTTCTGCACGC
TTAAAGGTGATGTCAAAACTCGACATTGCCGAGCGCCGCCTGCCCCAAGATGGCCGCATAAAGATGAAACTCAGCCGCAC
CAAGAGCATCGATTTTCGGGTAAGTACCCTGCCGACGCTCTGGGGCGAAAAAATTGTAATGCGTATTCTGGACTCCTCTT
CTGCCCAGCTTGGTATCGAGAAGCTCGGTTACGAGCCAGACCAAAAGCAGCTGTACCTCGATAACCTCGCTAAACCCCAG
GGCATGATTCTGGTGACCGGCCCCACAGGCTCGGGTAAAACCGTATCCCTGTACACCGGCCTTAATATCCTCAATACCGA
AGAGCGCAACATTTCCACCGCCGAAGACCCGGTAGAAATAAACCTTGAAGGCGTGAATCAGGTTCACATTAATAACAAGG
CAGGACTTACATTTGCGTCTGCTTTGCGATCGTTTTTGCGTCAGGACCCTGACGTGGTGATGGTGGGGGAAATCAGGGAT
TTGGAAACCGCCGAGATTGCCATTAAGGCAGCTCAAACCGGCCACTTGGTGTTATCCACCCTGCACACCAACTCTGCCGC
CGAAACCCTTACCCGTCTTTTAAATATGGGGGTGCCGGGCTATAACATCGCGAGCTCGGTGAATTTGATTATTGCCCAGC
GCCTCGCTAGGCGCCTGTGCCCAGAGTGTAAACAACCGGAAGAGATCCCCAATCACGAACTGGAGCGCCTGGGTTTTAAT
CAGGCGCAGATTGCCGAAGGCTTCACCGCTTTTAAGCCCTGCGGCTGCGATTTATGTTCCGGTGGTTATAAAGGTCGCGT
GGGTATTTATGAAGTCATGCCCATGAGTGATGAAATTGCAAGGGTCATTATGGAAGGCGGTAATTCGCTTGAAATTGCTC
GCATGGCCAAGTCTCAGGGCGTAAGGGACCTGCGCTTATCAGGGCTCCTTAAGGTGATACAAGGCGTAACCAGTATTGCA
GAGGTTAACCGCGTGACCAGTTTTTAA

Upstream 100 bases:

>100_bases
TGGACTGGGCACCATCAGGTACCTGTAAAGCAGCTGGTTTGTGTTAACAGCGACGTAGCATTCTGGGGACATCAAGTCCC
CAGTTCTTACTGGGTTAATA

Downstream 100 bases:

>100_bases
CTGCCGCATCTAGAATCTAGAAGCTAGAATCAAGTAACTCGCAACGCGAGCGCTCTAAAGGAAATAGATATGGCCACAGC
CGTCGCAAACAAATCCAAAA

Product: type IV pilus biogenesis protein PilB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 568; Mature: 567

Protein sequence:

>568_residues
MPTTGLHLGLSTLFLRKGLLTEEQLSEAVSQSRKNRHSLVTTLVISKLISAREIAELCYEEYGTPLLDLAEFDVSSIPED
FLNKKLIEKHRCLPLFKRGNRLYIGTSDPTNIPALEDFQFSAGLHAEAILVEDDKLAKALEKILEEDISALDLGGLDEEA
LAGIEVTDTDKRPENDNEGADDAPIVIYINKILTDAIRRGASDLHFEPYEKRYRIRFRIDGILHEVSEPPINLSGRISAR
LKVMSKLDIAERRLPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQKQLYLDNLAKPQ
GMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINNKAGLTFASALRSFLRQDPDVVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLLNMGVPGYNIASSVNLIIAQRLARRLCPECKQPEEIPNHELERLGFN
QAQIAEGFTAFKPCGCDLCSGGYKGRVGIYEVMPMSDEIARVIMEGGNSLEIARMAKSQGVRDLRLSGLLKVIQGVTSIA
EVNRVTSF

Sequences:

>Translated_568_residues
MPTTGLHLGLSTLFLRKGLLTEEQLSEAVSQSRKNRHSLVTTLVISKLISAREIAELCYEEYGTPLLDLAEFDVSSIPED
FLNKKLIEKHRCLPLFKRGNRLYIGTSDPTNIPALEDFQFSAGLHAEAILVEDDKLAKALEKILEEDISALDLGGLDEEA
LAGIEVTDTDKRPENDNEGADDAPIVIYINKILTDAIRRGASDLHFEPYEKRYRIRFRIDGILHEVSEPPINLSGRISAR
LKVMSKLDIAERRLPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQKQLYLDNLAKPQ
GMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINNKAGLTFASALRSFLRQDPDVVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLLNMGVPGYNIASSVNLIIAQRLARRLCPECKQPEEIPNHELERLGFN
QAQIAEGFTAFKPCGCDLCSGGYKGRVGIYEVMPMSDEIARVIMEGGNSLEIARMAKSQGVRDLRLSGLLKVIQGVTSIA
EVNRVTSF
>Mature_567_residues
PTTGLHLGLSTLFLRKGLLTEEQLSEAVSQSRKNRHSLVTTLVISKLISAREIAELCYEEYGTPLLDLAEFDVSSIPEDF
LNKKLIEKHRCLPLFKRGNRLYIGTSDPTNIPALEDFQFSAGLHAEAILVEDDKLAKALEKILEEDISALDLGGLDEEAL
AGIEVTDTDKRPENDNEGADDAPIVIYINKILTDAIRRGASDLHFEPYEKRYRIRFRIDGILHEVSEPPINLSGRISARL
KVMSKLDIAERRLPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQKQLYLDNLAKPQG
MILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINNKAGLTFASALRSFLRQDPDVVMVGEIRDL
ETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLLNMGVPGYNIASSVNLIIAQRLARRLCPECKQPEEIPNHELERLGFNQ
AQIAEGFTAFKPCGCDLCSGGYKGRVGIYEVMPMSDEIARVIMEGGNSLEIARMAKSQGVRDLRLSGLLKVIQGVTSIAE
VNRVTSF

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=403, Percent_Identity=48.3870967741936, Blast_Score=367, Evalue=1e-102,
Organism=Escherichia coli, GI1786296, Length=377, Percent_Identity=46.4190981432361, Blast_Score=342, Evalue=3e-95,
Organism=Escherichia coli, GI87082188, Length=280, Percent_Identity=33.2142857142857, Blast_Score=118, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013374
- InterPro:   IPR007831
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N [H]

EC number: NA

Molecular weight: Translated: 62784; Mature: 62653

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTTGLHLGLSTLFLRKGLLTEEQLSEAVSQSRKNRHSLVTTLVISKLISAREIAELCYE
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYGTPLLDLAEFDVSSIPEDFLNKKLIEKHRCLPLFKRGNRLYIGTSDPTNIPALEDFQF
HHCCCEEHHHHCCHHCCCHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCCCCCCCCCCC
SAGLHAEAILVEDDKLAKALEKILEEDISALDLGGLDEEALAGIEVTDTDKRPENDNEGA
CCCCCEEEEEECCHHHHHHHHHHHHHHHCEECCCCCCHHHHCCCEEECCCCCCCCCCCCC
DDAPIVIYINKILTDAIRRGASDLHFEPYEKRYRIRFRIDGILHEVSEPPINLSGRISAR
CCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCHHHH
LKVMSKLDIAERRLPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIE
HHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCHHCCHH
KLGYEPDQKQLYLDNLAKPQGMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEI
HHCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEECCCCCCCCCCCCCEEE
NLEGVNQVHINNKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLST
EECCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEECCCCCEEEEE
LHTNSAAETLTRLLNMGVPGYNIASSVNLIIAQRLARRLCPECKQPEEIPNHELERLGFN
ECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCC
QAQIAEGFTAFKPCGCDLCSGGYKGRVGIYEVMPMSDEIARVIMEGGNSLEIARMAKSQG
HHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHCC
VRDLRLSGLLKVIQGVTSIAEVNRVTSF
CHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTTGLHLGLSTLFLRKGLLTEEQLSEAVSQSRKNRHSLVTTLVISKLISAREIAELCYE
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYGTPLLDLAEFDVSSIPEDFLNKKLIEKHRCLPLFKRGNRLYIGTSDPTNIPALEDFQF
HHCCCEEHHHHCCHHCCCHHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCCCCCCCCCCC
SAGLHAEAILVEDDKLAKALEKILEEDISALDLGGLDEEALAGIEVTDTDKRPENDNEGA
CCCCCEEEEEECCHHHHHHHHHHHHHHHCEECCCCCCHHHHCCCEEECCCCCCCCCCCCC
DDAPIVIYINKILTDAIRRGASDLHFEPYEKRYRIRFRIDGILHEVSEPPINLSGRISAR
CCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCHHHH
LKVMSKLDIAERRLPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIE
HHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCHHCCHH
KLGYEPDQKQLYLDNLAKPQGMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEI
HHCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEECCCCCCCCCCCCCEEE
NLEGVNQVHINNKAGLTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLST
EECCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEECCCCCEEEEE
LHTNSAAETLTRLLNMGVPGYNIASSVNLIIAQRLARRLCPECKQPEEIPNHELERLGFN
ECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCC
QAQIAEGFTAFKPCGCDLCSGGYKGRVGIYEVMPMSDEIARVIMEGGNSLEIARMAKSQG
HHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHCC
VRDLRLSGLLKVIQGVTSIAEVNRVTSF
CHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]