Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773481

Identifier: 119773481

GI number: 119773481

Start: 410025

End: 410489

Strand: Direct

Name: 119773481

Synonym: Sama_0340

Alternate gene names: NA

Gene position: 410025-410489 (Clockwise)

Preceding gene: 119773480

Following gene: 119773482

Centisome position: 9.52

GC content: 53.55

Gene sequence:

>465_bases
ATGAAACCCGCTTTCCTGCTCGCTGCTCTGCTTTCCACTCCTGCCGCTGCACAGGCCTCCCCCGAAGCCGTGGTGCGTGA
GTTTTTGGCAGCGTTCAATCAACAGAATGTGGCCCAGATGCTGGCCCAAACAAACCAAGCCGTGTATTGGAACCATATCA
AAGGCCAAAAGGTGGATACCAAGGCCGAGAGCCAGACCGAGTTTGGTGCGGCACTGCAGGACTATTTTGAGTCTCTGCCC
GGTGCGCATGCTGAAATACTGTCGCTGACCGTGTCCGGCAGCTACGTCAGTATTCTCGAGCAGGTCAGTTGGAACCTCGA
CGGTGAAATCAACAGTCAATGCTCTATTGGTGTGTATGAGCTGTTGGGCGAGAAAATTTCGTCTATCTGGTATTACCCTG
CCCATGGCTGTGAACCCAGAGACACCGTGATGGAAGAGGCGCCAGAAGTACCGACACAAGAATAA

Upstream 100 bases:

>100_bases
TGCGGGGCTTTTGCTTGCGCCAATATCTTGTATAGTGTTGCTTTTGTGACAGTGTGTTTACGCTGCCTACAGGCCAATTC
CGCAAAACAAGAGGTGTTCG

Downstream 100 bases:

>100_bases
AAGGACTGCCCCGTGGACAAGCAATATGTGGTTGCGCTGGATCAGGGCACAACCAGTTCCCGCGCCATTGTTTTTGACCG
GGATGCCAACCTGGTGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDTKAESQTEFGAALQDYFESLP
GAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYELLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE

Sequences:

>Translated_154_residues
MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDTKAESQTEFGAALQDYFESLP
GAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYELLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE
>Mature_154_residues
MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDTKAESQTEFGAALQDYFESLP
GAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYELLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16837; Mature: 16837

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDT
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEECCCCCCCCC
KAESQTEFGAALQDYFESLPGAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYE
CHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHH
LLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE
HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDT
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEECCCCCCCCC
KAESQTEFGAALQDYFESLPGAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYE
CHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHH
LLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE
HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA