| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773481
Identifier: 119773481
GI number: 119773481
Start: 410025
End: 410489
Strand: Direct
Name: 119773481
Synonym: Sama_0340
Alternate gene names: NA
Gene position: 410025-410489 (Clockwise)
Preceding gene: 119773480
Following gene: 119773482
Centisome position: 9.52
GC content: 53.55
Gene sequence:
>465_bases ATGAAACCCGCTTTCCTGCTCGCTGCTCTGCTTTCCACTCCTGCCGCTGCACAGGCCTCCCCCGAAGCCGTGGTGCGTGA GTTTTTGGCAGCGTTCAATCAACAGAATGTGGCCCAGATGCTGGCCCAAACAAACCAAGCCGTGTATTGGAACCATATCA AAGGCCAAAAGGTGGATACCAAGGCCGAGAGCCAGACCGAGTTTGGTGCGGCACTGCAGGACTATTTTGAGTCTCTGCCC GGTGCGCATGCTGAAATACTGTCGCTGACCGTGTCCGGCAGCTACGTCAGTATTCTCGAGCAGGTCAGTTGGAACCTCGA CGGTGAAATCAACAGTCAATGCTCTATTGGTGTGTATGAGCTGTTGGGCGAGAAAATTTCGTCTATCTGGTATTACCCTG CCCATGGCTGTGAACCCAGAGACACCGTGATGGAAGAGGCGCCAGAAGTACCGACACAAGAATAA
Upstream 100 bases:
>100_bases TGCGGGGCTTTTGCTTGCGCCAATATCTTGTATAGTGTTGCTTTTGTGACAGTGTGTTTACGCTGCCTACAGGCCAATTC CGCAAAACAAGAGGTGTTCG
Downstream 100 bases:
>100_bases AAGGACTGCCCCGTGGACAAGCAATATGTGGTTGCGCTGGATCAGGGCACAACCAGTTCCCGCGCCATTGTTTTTGACCG GGATGCCAACCTGGTGGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDTKAESQTEFGAALQDYFESLP GAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYELLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE
Sequences:
>Translated_154_residues MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDTKAESQTEFGAALQDYFESLP GAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYELLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE >Mature_154_residues MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDTKAESQTEFGAALQDYFESLP GAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYELLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16837; Mature: 16837
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDT CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEECCCCCCCCC KAESQTEFGAALQDYFESLPGAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYE CHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHH LLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure MKPAFLLAALLSTPAAAQASPEAVVREFLAAFNQQNVAQMLAQTNQAVYWNHIKGQKVDT CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEECCCCCCCCC KAESQTEFGAALQDYFESLPGAHAEILSLTVSGSYVSILEQVSWNLDGEINSQCSIGVYE CHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHH LLGEKISSIWYYPAHGCEPRDTVMEEAPEVPTQE HHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA