Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773472

Identifier: 119773472

GI number: 119773472

Start: 397426

End: 397959

Strand: Direct

Name: 119773472

Synonym: Sama_0331

Alternate gene names: NA

Gene position: 397426-397959 (Clockwise)

Preceding gene: 119773471

Following gene: 119773474

Centisome position: 9.23

GC content: 55.43

Gene sequence:

>534_bases
ATGACAACGCAAAGCTTTATACTCACGCCACTGGCGGGCAGCGCCCTCTGGGGCGCCATAGGCCTGCTGATAGGGGTAAT
ACTGATTGGTTTTTTTGCCAGACGTAAACCCATGACCAAAACGGCCAGTGCCGTTGCCACTGGCATTATTCTCGCTGTGG
TTGGTCTGTTGGGGTGGATTTTCATTGGGGCTTTATCACCGGAGGCCCGCCTCGAGCAGGATAAGTTGGTGCTGGACTTG
CCCGCTTACAGCCGCATCATTCCTGTATCTTCTTTACAGCTTGGTGAAGCTCGTGTGATGGCCACATCGGCTGCTGATGC
GCCTAAACTGGGGTTTCGAACAAACGGGGTCGGTACACCGGGCTACAATCTCGGTTGGTTTCGCCTCAAGGGGACTGACG
CCAAGGCACTCGTCTCGGTGACAGGCACAGATCCCTTGTTGGTTATCCCGGTGGATGAGGGGTATACCCTGGTGCTGAGC
ACACCAGATGGGGAGGCCTTGTTGGCCGCTTTGCATAACGAACAAGAACGCTGA

Upstream 100 bases:

>100_bases
TTTATTGCAGCTGCTAATTTGTCATTTGAGGTCTAATGCTCTTGACATATTATGTCTTTCGCGCAACCTTGGGTGAACTG
ATGAGAGCTGGGGCAGATTG

Downstream 100 bases:

>100_bases
TAAGTCACGCCGATAGGGCTTGCTGGCATAATGGGTCAGTAGCAAGCGCTCATGTGTAAAGAGACCACCCCCGCTCAGAG
ATGAGATGAGTAAAAAGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MTTQSFILTPLAGSALWGAIGLLIGVILIGFFARRKPMTKTASAVATGIILAVVGLLGWIFIGALSPEARLEQDKLVLDL
PAYSRIIPVSSLQLGEARVMATSAADAPKLGFRTNGVGTPGYNLGWFRLKGTDAKALVSVTGTDPLLVIPVDEGYTLVLS
TPDGEALLAALHNEQER

Sequences:

>Translated_177_residues
MTTQSFILTPLAGSALWGAIGLLIGVILIGFFARRKPMTKTASAVATGIILAVVGLLGWIFIGALSPEARLEQDKLVLDL
PAYSRIIPVSSLQLGEARVMATSAADAPKLGFRTNGVGTPGYNLGWFRLKGTDAKALVSVTGTDPLLVIPVDEGYTLVLS
TPDGEALLAALHNEQER
>Mature_176_residues
TTQSFILTPLAGSALWGAIGLLIGVILIGFFARRKPMTKTASAVATGIILAVVGLLGWIFIGALSPEARLEQDKLVLDLP
AYSRIIPVSSLQLGEARVMATSAADAPKLGFRTNGVGTPGYNLGWFRLKGTDAKALVSVTGTDPLLVIPVDEGYTLVLST
PDGEALLAALHNEQER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18599; Mature: 18468

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQSFILTPLAGSALWGAIGLLIGVILIGFFARRKPMTKTASAVATGIILAVVGLLGWI
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FIGALSPEARLEQDKLVLDLPAYSRIIPVSSLQLGEARVMATSAADAPKLGFRTNGVGTP
HHHCCCCHHHCCCCCEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCEECCCCCCC
GYNLGWFRLKGTDAKALVSVTGTDPLLVIPVDEGYTLVLSTPDGEALLAALHNEQER
CCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
TTQSFILTPLAGSALWGAIGLLIGVILIGFFARRKPMTKTASAVATGIILAVVGLLGWI
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FIGALSPEARLEQDKLVLDLPAYSRIIPVSSLQLGEARVMATSAADAPKLGFRTNGVGTP
HHHCCCCHHHCCCCCEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCEECCCCCCC
GYNLGWFRLKGTDAKALVSVTGTDPLLVIPVDEGYTLVLSTPDGEALLAALHNEQER
CCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA