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The map label for this gene is yifB [C]

Identifier: 119717471

GI number: 119717471

Start: 3449058

End: 3450644

Strand: Reverse

Name: yifB [C]

Synonym: Noca_3247

Alternate gene names: 119717471

Gene position: 3450644-3449058 (Counterclockwise)

Preceding gene: 119717472

Following gene: 119717470

Centisome position: 69.21

GC content: 73.09

Gene sequence:

>1587_bases
ATGCCCTTCGCGACCGCCCACACCGTCTCGCTGCACGGCGCCGTGGGCCACCTCATCGACGTCCAGTCCGACGTCTCGCC
CGGTCAGGTCGGCGTCACCATGGTCGGCCGGGCCGACACGATGGTCAGCGAGTCCCGCGACCGGTGCCGGATGGCGATCA
TCAACAGCGAGCTCGACTGGCCCGCGACCCGGCGGATCACGATCCTGCTCTCGCCGGCCGACCTGGCCAAGAGCGGCACC
CACTTCGACTTGGCCATCGCGGTCTCGGTCCTCGCGGCCGCCGGCAGCGTGCCGGCCCGGTCCCTCGAGGGCACCGCCTT
CATCGGCGAGCTCACCCTGGACGGCAACCTGCGCTCTGCCGCGGGAGTCCTGCCGATGGCCCTCGCCGCCGCCGCGCGCG
GCATCCGGGCCGTGTTCGTGCCCGAGCCGCACGTCGCCGAGGCCGCGATGGTGCCGGACCTGAGCGTGATCGGGGTGCGC
TCGTTGAGCCAGGTGGTCGCCGTGCTCCGTGACGAGGAGCCACCCGACGCGCCACCGGTGGCGCCGATGTCGGGCGCCCA
GCTCCTCGCGTGGCGCGGCCAGGAGCGGCTCGATGAGCTCGACCTGGCCGACCTGGTCGGCATCGACGACGCCCGCTACG
CCGTCGAGGTGGCGGCCGCAGGCGGACACCATCTGCTGATGTCGGGGCCTAAGGGGTGCGGCAAGACGAGTCTCGCCGAG
CGGATCGCCGGCATCCTCCCGGACCTGACCCACGCCGAGTCGGTGGAGCTGAGCGCGATCCACTCCCTAGCCGGCATCCT
CGACCCGGCCGCGGGCTTCCCGACCAGACCGCCGTTCTCGGCGCCGCACCACGATGCCAGCAAGGCCAGCCTGATCGGCG
GCGGCCTCGGCATCGTCCGCCCCGGCGAGGTCAGCAAGGCCCACTCCGGGGTCCTCTTCCTGGACGAGTTCCCGCTCTTC
CACTCCGACGTCATCGAGGCGCTGCGGCAGCCGCTCGAGAACGGCGACGTCACGGTCGCCCGACGCGACGAGTCGGTGAC
CCTCCCGGCGCGATGCATGGTCGTCCTCGCGGCCAACCCGTGCCCGTGCGGCGACTACAGCGCAGACGTGCGGATCAACA
ACTGCAGCTGTCGCGAGGTGCAGCGCCGCGCCTACCGCAACAAGGTCACCGGGCCGGTGACGGACCGGGTCGACATCGTG
CGGCACCTGCCGCCCCTGCGGAAGCGCGACGCGCTCGCCGATCTCGCGCCGCCGGAGTCGACGGCCCAGGTCCGCGAGCG
GGTGGTCGCGGCCCGTGCTCGCCAGGCCGAGCGGTACGCCGAGGAGAGCTGGCGGCTCAACGGGCATGCGCCCGGCCCGG
TGCTGCGGGAGCGCTGGCCGTTGACCAAGGCCGGCCAGAAGGCGGTCGACGACCAGCTCTACAACGGGCGGTTGAGCCGG
CGCGGCGCCACCCGTGTCCACCGGCTCGCCTGGACGGTCGCCGACCTGCGACACCTCGACCAGCCCGGTCTCGACGAGGT
CGACACCGCGCTGCGCCTCCGCACCGGCGACCTCCTGCTGCTGTCGATGCTGGAGCGGGTCGGATGA

Upstream 100 bases:

>100_bases
ACCGGGGCGTCGCGGTGCGGGACATCCGGATCGACCTGGTCGGCATCGTCCGGCCGCGCCGCGGATCCTCGGTCGTCGAC
CACGTGCGGGGGATCGGCTG

Downstream 100 bases:

>100_bases
GCGCGTCCGAGGAGGACCGCCTGCTTCGGGTCGCGCTGTCGGCGCTCGGTGAGCCCGGCGACCCCCGGCTCCTGGACTGG
GTCACCCGGCTCGGGCCAGC

Product: Mg chelatase subunit ChlI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 527

Protein sequence:

>528_residues
MPFATAHTVSLHGAVGHLIDVQSDVSPGQVGVTMVGRADTMVSESRDRCRMAIINSELDWPATRRITILLSPADLAKSGT
HFDLAIAVSVLAAAGSVPARSLEGTAFIGELTLDGNLRSAAGVLPMALAAAARGIRAVFVPEPHVAEAAMVPDLSVIGVR
SLSQVVAVLRDEEPPDAPPVAPMSGAQLLAWRGQERLDELDLADLVGIDDARYAVEVAAAGGHHLLMSGPKGCGKTSLAE
RIAGILPDLTHAESVELSAIHSLAGILDPAAGFPTRPPFSAPHHDASKASLIGGGLGIVRPGEVSKAHSGVLFLDEFPLF
HSDVIEALRQPLENGDVTVARRDESVTLPARCMVVLAANPCPCGDYSADVRINNCSCREVQRRAYRNKVTGPVTDRVDIV
RHLPPLRKRDALADLAPPESTAQVRERVVAARARQAERYAEESWRLNGHAPGPVLRERWPLTKAGQKAVDDQLYNGRLSR
RGATRVHRLAWTVADLRHLDQPGLDEVDTALRLRTGDLLLLSMLERVG

Sequences:

>Translated_528_residues
MPFATAHTVSLHGAVGHLIDVQSDVSPGQVGVTMVGRADTMVSESRDRCRMAIINSELDWPATRRITILLSPADLAKSGT
HFDLAIAVSVLAAAGSVPARSLEGTAFIGELTLDGNLRSAAGVLPMALAAAARGIRAVFVPEPHVAEAAMVPDLSVIGVR
SLSQVVAVLRDEEPPDAPPVAPMSGAQLLAWRGQERLDELDLADLVGIDDARYAVEVAAAGGHHLLMSGPKGCGKTSLAE
RIAGILPDLTHAESVELSAIHSLAGILDPAAGFPTRPPFSAPHHDASKASLIGGGLGIVRPGEVSKAHSGVLFLDEFPLF
HSDVIEALRQPLENGDVTVARRDESVTLPARCMVVLAANPCPCGDYSADVRINNCSCREVQRRAYRNKVTGPVTDRVDIV
RHLPPLRKRDALADLAPPESTAQVRERVVAARARQAERYAEESWRLNGHAPGPVLRERWPLTKAGQKAVDDQLYNGRLSR
RGATRVHRLAWTVADLRHLDQPGLDEVDTALRLRTGDLLLLSMLERVG
>Mature_527_residues
PFATAHTVSLHGAVGHLIDVQSDVSPGQVGVTMVGRADTMVSESRDRCRMAIINSELDWPATRRITILLSPADLAKSGTH
FDLAIAVSVLAAAGSVPARSLEGTAFIGELTLDGNLRSAAGVLPMALAAAARGIRAVFVPEPHVAEAAMVPDLSVIGVRS
LSQVVAVLRDEEPPDAPPVAPMSGAQLLAWRGQERLDELDLADLVGIDDARYAVEVAAAGGHHLLMSGPKGCGKTSLAER
IAGILPDLTHAESVELSAIHSLAGILDPAAGFPTRPPFSAPHHDASKASLIGGGLGIVRPGEVSKAHSGVLFLDEFPLFH
SDVIEALRQPLENGDVTVARRDESVTLPARCMVVLAANPCPCGDYSADVRINNCSCREVQRRAYRNKVTGPVTDRVDIVR
HLPPLRKRDALADLAPPESTAQVRERVVAARARQAERYAEESWRLNGHAPGPVLRERWPLTKAGQKAVDDQLYNGRLSRR
GATRVHRLAWTVADLRHLDQPGLDEVDTALRLRTGDLLLLSMLERVG

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=524, Percent_Identity=36.2595419847328, Blast_Score=286, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 56392; Mature: 56261

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFATAHTVSLHGAVGHLIDVQSDVSPGQVGVTMVGRADTMVSESRDRCRMAIINSELDW
CCCCCEEEEEECCHHHHHEECCCCCCCCCCCEEEECCCHHHHHHCHHHEEEEEECCCCCC
PATRRITILLSPADLAKSGTHFDLAIAVSVLAAAGSVPARSLEGTAFIGELTLDGNLRSA
CCCEEEEEEECCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHH
AGVLPMALAAAARGIRAVFVPEPHVAEAAMVPDLSVIGVRSLSQVVAVLRDEEPPDAPPV
HHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
APMSGAQLLAWRGQERLDELDLADLVGIDDARYAVEVAAAGGHHLLMSGPKGCGKTSLAE
CCCCCCEEEEECCHHHHHHCCHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHH
RIAGILPDLTHAESVELSAIHSLAGILDPAAGFPTRPPFSAPHHDASKASLIGGGLGIVR
HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCC
PGEVSKAHSGVLFLDEFPLFHSDVIEALRQPLENGDVTVARRDESVTLPARCMVVLAANP
CCCCCHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCEECCCEEEEEEECCC
CPCGDYSADVRINNCSCREVQRRAYRNKVTGPVTDRVDIVRHLPPLRKRDALADLAPPES
CCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCH
TAQVRERVVAARARQAERYAEESWRLNGHAPGPVLRERWPLTKAGQKAVDDQLYNGRLSR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHC
RGATRVHRLAWTVADLRHLDQPGLDEVDTALRLRTGDLLLLSMLERVG
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PFATAHTVSLHGAVGHLIDVQSDVSPGQVGVTMVGRADTMVSESRDRCRMAIINSELDW
CCCCEEEEEECCHHHHHEECCCCCCCCCCCEEEECCCHHHHHHCHHHEEEEEECCCCCC
PATRRITILLSPADLAKSGTHFDLAIAVSVLAAAGSVPARSLEGTAFIGELTLDGNLRSA
CCCEEEEEEECCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHH
AGVLPMALAAAARGIRAVFVPEPHVAEAAMVPDLSVIGVRSLSQVVAVLRDEEPPDAPPV
HHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
APMSGAQLLAWRGQERLDELDLADLVGIDDARYAVEVAAAGGHHLLMSGPKGCGKTSLAE
CCCCCCEEEEECCHHHHHHCCHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHH
RIAGILPDLTHAESVELSAIHSLAGILDPAAGFPTRPPFSAPHHDASKASLIGGGLGIVR
HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCC
PGEVSKAHSGVLFLDEFPLFHSDVIEALRQPLENGDVTVARRDESVTLPARCMVVLAANP
CCCCCHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCEECCCEEEEEEECCC
CPCGDYSADVRINNCSCREVQRRAYRNKVTGPVTDRVDIVRHLPPLRKRDALADLAPPES
CCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCH
TAQVRERVVAARARQAERYAEESWRLNGHAPGPVLRERWPLTKAGQKAVDDQLYNGRLSR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHC
RGATRVHRLAWTVADLRHLDQPGLDEVDTALRLRTGDLLLLSMLERVG
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]