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The map label for this gene is yraN [C]

Identifier: 119717472

GI number: 119717472

Start: 3450644

End: 3451018

Strand: Reverse

Name: yraN [C]

Synonym: Noca_3248

Alternate gene names: 119717472

Gene position: 3451018-3450644 (Counterclockwise)

Preceding gene: 119717474

Following gene: 119717471

Centisome position: 69.22

GC content: 72.27

Gene sequence:

>375_bases
ATGACGAGTTCGGCTGCGGCCGCGATCAAGCAGGCGCTGGGCGCCTACGGCGAGACCCTCGCCGCGCGCCACCTGGTGGG
GCAGGGCATGGTCCTGCTCGAGCGCAACTGGCGCTGTGAGGCGGGAGAGATCGACCTGGTCCTACGTGACGGCGACGTCC
TGGTGGTGTGCGAGGTCAAGACCCGCAGCAGCCTGCGCTACGGCACCCCGCACGAGGCCGTCACCGACATCAAGGTCGCC
CGGCTGCGCCGGCTGGCGTCGCGCTGGGTCCAGGACCGGGGCGTCGCGGTGCGGGACATCCGGATCGACCTGGTCGGCAT
CGTCCGGCCGCGCCGCGGATCCTCGGTCGTCGACCACGTGCGGGGGATCGGCTGA

Upstream 100 bases:

>100_bases
TCCACAGCCCGCCTCCGATCCCGGTCGTCCACAAGGACGCCGATCGCAGGCCCGCTTCGTCCGTGCTGCCGGGGAGGCTC
CTGCGCAGGAGGTCGAGAAC

Downstream 100 bases:

>100_bases
TGCCCTTCGCGACCGCCCACACCGTCTCGCTGCACGGCGCCGTGGGCCACCTCATCGACGTCCAGTCCGACGTCTCGCCC
GGTCAGGTCGGCGTCACCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MTSSAAAAIKQALGAYGETLAARHLVGQGMVLLERNWRCEAGEIDLVLRDGDVLVVCEVKTRSSLRYGTPHEAVTDIKVA
RLRRLASRWVQDRGVAVRDIRIDLVGIVRPRRGSSVVDHVRGIG

Sequences:

>Translated_124_residues
MTSSAAAAIKQALGAYGETLAARHLVGQGMVLLERNWRCEAGEIDLVLRDGDVLVVCEVKTRSSLRYGTPHEAVTDIKVA
RLRRLASRWVQDRGVAVRDIRIDLVGIVRPRRGSSVVDHVRGIG
>Mature_123_residues
TSSAAAAIKQALGAYGETLAARHLVGQGMVLLERNWRCEAGEIDLVLRDGDVLVVCEVKTRSSLRYGTPHEAVTDIKVAR
LRRLASRWVQDRGVAVRDIRIDLVGIVRPRRGSSVVDHVRGIG

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3248_NOCSJ (A1SLR5)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_924437.1
- STRING:   A1SLR5
- GeneID:   4599186
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_3248
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   VERNWRC
- BioCyc:   NSP35761:NOCA_3248-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13584; Mature: 13453

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSAAAAIKQALGAYGETLAARHLVGQGMVLLERNWRCEAGEIDLVLRDGDVLVVCEVK
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEEC
TRSSLRYGTPHEAVTDIKVARLRRLASRWVQDRGVAVRDIRIDLVGIVRPRRGSSVVDHV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCHHHHHH
RGIG
HCCC
>Mature Secondary Structure 
TSSAAAAIKQALGAYGETLAARHLVGQGMVLLERNWRCEAGEIDLVLRDGDVLVVCEVK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEEC
TRSSLRYGTPHEAVTDIKVARLRRLASRWVQDRGVAVRDIRIDLVGIVRPRRGSSVVDHV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCHHHHHH
RGIG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA