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The map label for this gene is ydcS [H]

Identifier: 119717440

GI number: 119717440

Start: 3414046

End: 3415263

Strand: Reverse

Name: ydcS [H]

Synonym: Noca_3216

Alternate gene names: 119717440

Gene position: 3415263-3414046 (Counterclockwise)

Preceding gene: 119717441

Following gene: 119717439

Centisome position: 68.5

GC content: 68.06

Gene sequence:

>1218_bases
ATGAGACGGATCGGATCCACGCGGCTGGCGGCCGTGGCCTGCGCGAGCGTGCTCGCACTCGCCGCCTCCGCCTGCGGCAC
GAGCTCGGGAGACGGCGACGGAGGCGGAGCGAAGGCCGGCGAGAAGCAGGGTGGCTTCACCGCCCCCGACGTGCCGATGG
CCGAGGCGATCGGCGACCCGGAGGGACAGGTGAGCATCCTGGCCTGGCCCGGCTACGCCGAGGACGGGTCGACCGACAAG
TCGATCGACTGGGTCACGCCGTTCGAGAAGGAGAGCGGCTGCCAGGCGAACGTGAAGTACTTCGCGACCTCCGACGAGGC
CGTGCAGCTGATGAAGACCGGCGAGTACGACGTGGTCTCGGCGTCCGGCGATGCGACGTTGCGCCTGATCGCGGGTGGCG
ACGTGGCGCCCGTCAACACCGACCTGCTCACCAACTACGGCGACATCGCGGACTTCCTGAAGGACCAGCAGTTCAACTCC
GTCGGTGGCCAGATGTACGGCGTGCCGCACGGCTGGGGCGCCAACCTGCTGATGTACACCAAGGACGTCGTCAGCCCGGC
ACCGACCAGCTGGGGTGCGGTCTTCGACGGCGCGTCGGAGTACGCCGGCAAGGTCACGGCGTACGACTCGCCGATCTACA
TCGCCGACGCCGCGCTGTACCTGATGAAGACGCAGCCCGACCTCGGGATCAAGGACCCGTACGCGCTCGACGAGGACCAG
CTCGCCGCGGCCGTCGACCTGCTCAAGGCGCAGAAGGCGAACGTCTCGGAGTACTGGTCGGACTACCTCAAGGAGGTCGC
GGCGTTCAAGAGCGGCGACTCGGTGATCGGCACGACGTGGCAGGTCATCGCGTCGACGATCGGCGACTCGGTCGAGGCCG
TCCTGCCCGAGGAGGGCTCGACCGGCTGGTCGGACACCTGGATGATCAGCTCGAAGGCGCCGAACCCCAACTGTGGCTAT
CTCTGGATGGACTACATCACCAGCCCGAAGGCGCAGGCCGCGGTCGCGGAGTACTTCGGCGAGGCGCCGGCCAACGTGAA
GGCGTGCGACCTGACCTCGGAGGGCTTCTGCGACACCTACCACGTGACCGACGCCGACTACGCGGCGCAGATCCACTACT
GGACCACGCCGATCGAGCAGTGCCTGGACGGCCGCACGGACGTGACGTGCACCGACTACGGCCAGTGGACCACCGCGTGG
ACCGAGATCAAGGGGTGA

Upstream 100 bases:

>100_bases
TCGAACGACGCGACCAGCGCGTCGTCGTCACGTGGCGTCGTGACCACCTGGTGTCCCTGGGTTCCCCCGACCCAGCGGCG
TCCCCTGAGGAGGAGACAGC

Downstream 100 bases:

>100_bases
GTTGACCGTCCTCGACCGTCGCCCGGGCCTCCGGGTGGGCCTGCTCCTGACGCCACCGATGCTGTGGCTGGGAGTGGCCT
ACCTGGGGGCCCTGGCGGCT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MRRIGSTRLAAVACASVLALAASACGTSSGDGDGGGAKAGEKQGGFTAPDVPMAEAIGDPEGQVSILAWPGYAEDGSTDK
SIDWVTPFEKESGCQANVKYFATSDEAVQLMKTGEYDVVSASGDATLRLIAGGDVAPVNTDLLTNYGDIADFLKDQQFNS
VGGQMYGVPHGWGANLLMYTKDVVSPAPTSWGAVFDGASEYAGKVTAYDSPIYIADAALYLMKTQPDLGIKDPYALDEDQ
LAAAVDLLKAQKANVSEYWSDYLKEVAAFKSGDSVIGTTWQVIASTIGDSVEAVLPEEGSTGWSDTWMISSKAPNPNCGY
LWMDYITSPKAQAAVAEYFGEAPANVKACDLTSEGFCDTYHVTDADYAAQIHYWTTPIEQCLDGRTDVTCTDYGQWTTAW
TEIKG

Sequences:

>Translated_405_residues
MRRIGSTRLAAVACASVLALAASACGTSSGDGDGGGAKAGEKQGGFTAPDVPMAEAIGDPEGQVSILAWPGYAEDGSTDK
SIDWVTPFEKESGCQANVKYFATSDEAVQLMKTGEYDVVSASGDATLRLIAGGDVAPVNTDLLTNYGDIADFLKDQQFNS
VGGQMYGVPHGWGANLLMYTKDVVSPAPTSWGAVFDGASEYAGKVTAYDSPIYIADAALYLMKTQPDLGIKDPYALDEDQ
LAAAVDLLKAQKANVSEYWSDYLKEVAAFKSGDSVIGTTWQVIASTIGDSVEAVLPEEGSTGWSDTWMISSKAPNPNCGY
LWMDYITSPKAQAAVAEYFGEAPANVKACDLTSEGFCDTYHVTDADYAAQIHYWTTPIEQCLDGRTDVTCTDYGQWTTAW
TEIKG
>Mature_405_residues
MRRIGSTRLAAVACASVLALAASACGTSSGDGDGGGAKAGEKQGGFTAPDVPMAEAIGDPEGQVSILAWPGYAEDGSTDK
SIDWVTPFEKESGCQANVKYFATSDEAVQLMKTGEYDVVSASGDATLRLIAGGDVAPVNTDLLTNYGDIADFLKDQQFNS
VGGQMYGVPHGWGANLLMYTKDVVSPAPTSWGAVFDGASEYAGKVTAYDSPIYIADAALYLMKTQPDLGIKDPYALDEDQ
LAAAVDLLKAQKANVSEYWSDYLKEVAAFKSGDSVIGTTWQVIASTIGDSVEAVLPEEGSTGWSDTWMISSKAPNPNCGY
LWMDYITSPKAQAAVAEYFGEAPANVKACDLTSEGFCDTYHVTDADYAAQIHYWTTPIEQCLDGRTDVTCTDYGQWTTAW
TEIKG

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=361, Percent_Identity=44.0443213296399, Blast_Score=287, Evalue=9e-79,
Organism=Escherichia coli, GI1787367, Length=308, Percent_Identity=23.0519480519481, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42961; Mature: 42961

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIGSTRLAAVACASVLALAASACGTSSGDGDGGGAKAGEKQGGFTAPDVPMAEAIGDP
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
EGQVSILAWPGYAEDGSTDKSIDWVTPFEKESGCQANVKYFATSDEAVQLMKTGEYDVVS
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCEEEEE
ASGDATLRLIAGGDVAPVNTDLLTNYGDIADFLKDQQFNSVGGQMYGVPHGWGANLLMYT
CCCCEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEE
KDVVSPAPTSWGAVFDGASEYAGKVTAYDSPIYIADAALYLMKTQPDLGIKDPYALDEDQ
HHHCCCCCCCCCHHCCCHHHHCCEEEECCCCEEEECEEEEEEECCCCCCCCCCCCCCHHH
LAAAVDLLKAQKANVSEYWSDYLKEVAAFKSGDSVIGTTWQVIASTIGDSVEAVLPEEGS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHCCCEEEECCCCCC
TGWSDTWMISSKAPNPNCGYLWMDYITSPKAQAAVAEYFGEAPANVKACDLTSEGFCDTY
CCCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEE
HVTDADYAAQIHYWTTPIEQCLDGRTDVTCTDYGQWTTAWTEIKG
EECCCCCEEEEEEECCHHHHHHCCCCCEEEECCCCCEEEEEECCC
>Mature Secondary Structure
MRRIGSTRLAAVACASVLALAASACGTSSGDGDGGGAKAGEKQGGFTAPDVPMAEAIGDP
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
EGQVSILAWPGYAEDGSTDKSIDWVTPFEKESGCQANVKYFATSDEAVQLMKTGEYDVVS
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCEEEEE
ASGDATLRLIAGGDVAPVNTDLLTNYGDIADFLKDQQFNSVGGQMYGVPHGWGANLLMYT
CCCCEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEE
KDVVSPAPTSWGAVFDGASEYAGKVTAYDSPIYIADAALYLMKTQPDLGIKDPYALDEDQ
HHHCCCCCCCCCHHCCCHHHHCCEEEECCCCEEEECEEEEEEECCCCCCCCCCCCCCHHH
LAAAVDLLKAQKANVSEYWSDYLKEVAAFKSGDSVIGTTWQVIASTIGDSVEAVLPEEGS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHCCCEEEECCCCCC
TGWSDTWMISSKAPNPNCGYLWMDYITSPKAQAAVAEYFGEAPANVKACDLTSEGFCDTY
CCCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEE
HVTDADYAAQIHYWTTPIEQCLDGRTDVTCTDYGQWTTAWTEIKG
EECCCCCEEEEEEECCHHHHHHCCCCCEEEECCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]