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The map label for this gene is dapB [H]

Identifier: 119717391

GI number: 119717391

Start: 3367087

End: 3367830

Strand: Reverse

Name: dapB [H]

Synonym: Noca_3167

Alternate gene names: 119717391

Gene position: 3367830-3367087 (Counterclockwise)

Preceding gene: 119717397

Following gene: 119717390

Centisome position: 67.55

GC content: 71.91

Gene sequence:

>744_bases
ATGAAGGTGGGTGTGCTCGGCGCGCGCGGCAAGGTCGGCTCCGAGGTCTGCCGTGCGGTCGACGCCGCCGACGACCTGGA
GCTGGTCGCGCAGGTCGACGCCGATGACGAGATCGACGCGCTGGTGACCTCCGGCGCCCAGGCGGTCGTCGACTTCACCC
ATCCCGACGTCGTCATGGACAACCTCGAGTTCTGCGTCGACCACGGGATCCACGCCGTGGTCGGCACGACCGGGTTCGAC
GACGCCCGACTCGACCTGCTGCGTGGCTGGCTCGCCGACTCCCCGGGGACCGGTGTCCTGGTCGCGCCCAACTTCTCGAT
CGGCGCGATCTTGATGATGCGCTTCGCCGCGGTCGCGGCGCCGTTCTTCGAGTCGGTCGAGGTCGTCGAGCTGCACCACC
CGACGAAGGCCGACGCGCCGTCCGGCACGGCACGTCGTACGGCGGAGCTGATCGCGGCAGCGCGCCGCGAGGCCGGTGTC
GGGCCGGTGCCTGACGCCACCACCACGGCGCTCGAGGGCGCGCGCGGCGCGGACGTCGACGGGATCCGCGTCCACGGTCT
GCGGATCCGCGGCCTGGTCGCCCACCAGGAGGTGATCCTCGGTGGGGTGGGGGAGACCCTCACCATCCGGCACGACTCCC
TGGATCGGGCCTCGTTCGCCCCCGGCGTGCTCACCGGGCTGCGCTCGATCGCCGACCACCCGGGGCTCACGGTCGGACTG
GAACACTTCCTCGACCTGGACTGA

Upstream 100 bases:

>100_bases
GCGGGATCGTCTGCACTGCCATGGCCACAGACTGCCAGAAGCCGAGCACCGCGTGGAGGAGCGGCTCACCCGTGCTCACT
CCTAGTAGGTTGTCCGCGTG

Downstream 100 bases:

>100_bases
TCGGCCGGAAGAACTCCGCTTCTGCACGTTCCTGCATTGCAGGAATCCGCACATCGCAACGGCTTCCCGATCTCGTTGTG
GCTGGCAGGCTACGTCTCCT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKVGVLGARGKVGSEVCRAVDAADDLELVAQVDADDEIDALVTSGAQAVVDFTHPDVVMDNLEFCVDHGIHAVVGTTGFD
DARLDLLRGWLADSPGTGVLVAPNFSIGAILMMRFAAVAAPFFESVEVVELHHPTKADAPSGTARRTAELIAAARREAGV
GPVPDATTTALEGARGADVDGIRVHGLRIRGLVAHQEVILGGVGETLTIRHDSLDRASFAPGVLTGLRSIADHPGLTVGL
EHFLDLD

Sequences:

>Translated_247_residues
MKVGVLGARGKVGSEVCRAVDAADDLELVAQVDADDEIDALVTSGAQAVVDFTHPDVVMDNLEFCVDHGIHAVVGTTGFD
DARLDLLRGWLADSPGTGVLVAPNFSIGAILMMRFAAVAAPFFESVEVVELHHPTKADAPSGTARRTAELIAAARREAGV
GPVPDATTTALEGARGADVDGIRVHGLRIRGLVAHQEVILGGVGETLTIRHDSLDRASFAPGVLTGLRSIADHPGLTVGL
EHFLDLD
>Mature_247_residues
MKVGVLGARGKVGSEVCRAVDAADDLELVAQVDADDEIDALVTSGAQAVVDFTHPDVVMDNLEFCVDHGIHAVVGTTGFD
DARLDLLRGWLADSPGTGVLVAPNFSIGAILMMRFAAVAAPFFESVEVVELHHPTKADAPSGTARRTAELIAAARREAGV
GPVPDATTTALEGARGADVDGIRVHGLRIRGLVAHQEVILGGVGETLTIRHDSLDRASFAPGVLTGLRSIADHPGLTVGL
EHFLDLD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=250, Percent_Identity=28.8, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 25731; Mature: 25731

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVGVLGARGKVGSEVCRAVDAADDLELVAQVDADDEIDALVTSGAQAVVDFTHPDVVMD
CCEEEECCCCCHHHHHHHHHCCCCCHHHEEECCCCCHHHHHHHCCCEEEEECCCCHHHHH
NLEFCVDHGIHAVVGTTGFDDARLDLLRGWLADSPGTGVLVAPNFSIGAILMMRFAAVAA
HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
PFFESVEVVELHHPTKADAPSGTARRTAELIAAARREAGVGPVPDATTTALEGARGADVD
HHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCC
GIRVHGLRIRGLVAHQEVILGGVGETLTIRHDSLDRASFAPGVLTGLRSIADHPGLTVGL
CEEEEEEEEEEEHHHHHHEECCCCCEEEEECCCCCCHHCCHHHHHHHHHHHCCCCCEEEH
EHFLDLD
HHHHCCC
>Mature Secondary Structure
MKVGVLGARGKVGSEVCRAVDAADDLELVAQVDADDEIDALVTSGAQAVVDFTHPDVVMD
CCEEEECCCCCHHHHHHHHHCCCCCHHHEEECCCCCHHHHHHHCCCEEEEECCCCHHHHH
NLEFCVDHGIHAVVGTTGFDDARLDLLRGWLADSPGTGVLVAPNFSIGAILMMRFAAVAA
HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
PFFESVEVVELHHPTKADAPSGTARRTAELIAAARREAGVGPVPDATTTALEGARGADVD
HHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCC
GIRVHGLRIRGLVAHQEVILGGVGETLTIRHDSLDRASFAPGVLTGLRSIADHPGLTVGL
CEEEEEEEEEEEHHHHHHEECCCCCEEEEECCCCCCHHCCHHHHHHHHHHHCCCCCEEEH
EHFLDLD
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA