Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119717272
Identifier: 119717272
GI number: 119717272
Start: 3244551
End: 3246152
Strand: Reverse
Name: 119717272
Synonym: Noca_3048
Alternate gene names: NA
Gene position: 3246152-3244551 (Counterclockwise)
Preceding gene: 119717273
Following gene: 119717269
Centisome position: 65.11
GC content: 73.16
Gene sequence:
>1602_bases GTGGAGAACAGCCCGGAGTACCTCGAGAGCGGAGCCGGCGAACCGCTCCGGACCCCGTCCGAACCGACCGGTGGCGGGCG CCGCCGCACCGGCTGGATCGTCGGCGGGGCGGTGGCCTTCGTCGCCCTGGTCGGCGCCGGCGCGTGGGCGGCCTGGTCGT TCTTCGCCACCGGCCCGCAGCCGGCCGAGGCACTGCCCGGCTCGACGATCGCCTACGCCAGCGTCGACCTCGACCCGAGC GGTGGCCAGAAGATCGAGGCGCTGCGGACGCTGCGCAAGTTCCCGGCGTTCAAGGACCACATCGGGCTCCAGACCGACGA CGACGTCCGTCAACGGATCTTCGAGGAGATCCAGGGCTCCGGCGCCTGCCCGGACCTCGACTACGGCGACGACGTCGAGC CCTGGCTCGGCGACCGGATCGCCGTCGCCGCGGTCGACGCGGGCGAGGACGCTCTGTCTCCCGTGTTCGTGCTCCAGGTG AGCGACGAGGACCAGGCGGACCAGGGGCTGGCGAAGATCCAGGACTGCAGCGGCGGCGACGGCGGCGCCTGGTCGATCGC CGACGGCTGGGCGCTGGTGGGGGAGACCCAGGAGATCGTCGACCGGGTCGCCGCCGACGCCGCGAAGTCCCCGCTCTCGG ACGACGAGGACTACCGCACCTGGACCGACGCGGCCGGCGACGCCGGGATCGCGACGGCCTACCTCGCCCCCGAGGCCGGG CAGGTCCTCGCCGACAACCTCGGCGGACTGATGCCGCCGATGTACGGGCTCGGCGAGGCCGTCCCCGGCTCCGACACCGA CCTGATGCCCTCCGAGGTCACCCAGGGCCTCGAGGAGTTCCGCGGCCTGGCCGCCACCCTCCGCTTCGACGACGGCTCGC TCGAGCTGGAGGTGGCCGCCGACACCGGCAGGTCCCAGGACGCGCTCGACGGCGCCGACGGCGGGGACGACGTGCTGGCA ACGCTGCCCGACGACACCGCGGCCGCGCTGGGCCTCGGGTTCGCCGACGGGTGGTTCGGCGACCTCGTCGACCAGTTCGC CGGCCAGCTCGGCGGTGACCTGAGCGGCGACGAGCTCCTCGACGAGCTCTCCTCAGAGTCCGGCCTCGACCTGCCCGAGG ACGTCGAGACGCTGACCGGCGAGTCCGCCGCGCTGGCCATCGGGGGCGACTTCGACCTCGAGACGTTCGTGAACTCCACG GACGGCAGCGGCGTGCCGGTCGGGCTGAAGGTCCAGGGCGACCCGGACGCGATCGAGACGGTGCTGGACAAGCTGCGCCC CCAGCTCGACGGCGCCGAGTCCTTCCTCGGCAGTGACAGCGACGGCGACCTGATCGCCATCGGCCCCGACGGCGACTACC GCCAGCAGCTGCTCGAGGACGGGGACCTCGGGGACTCCGAGGTGTTCGAGAACGTCGTGCGCGAGGCCGGAGACGCGGCC GCGATCCTGTTCGTGAACTTCGACGCCGGGGACTGGCTGGCCAGCCTCGCGGACGGTGACCCGGAGGTCGAGGAGAACCT CGAGCCGCTGCAGGGCCTCGGCCTGAGCGGCTGGCTCCAGGACGACGCCAGCCACGTGGTGCTCCGGCTCACGACCGACT GA
Upstream 100 bases:
>100_bases CACGACCACGATCACCCCCTCGATCACCACCACCACGACCATCCCGAGCACCGCTCGGATCGGCACTCTCCGGACCACCG CGCCGGGTAGGCTCCCGCCC
Downstream 100 bases:
>100_bases TCGGCGCCACGGTCGCCCCCGTCACTCGCACCAGGTCGGCCGGCGCGATCGCCAGGTCCAGGCCGCGGCGTCCGCCCGAG ACGTAGACGGTGTCGAAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 533; Mature: 533
Protein sequence:
>533_residues MENSPEYLESGAGEPLRTPSEPTGGGRRRTGWIVGGAVAFVALVGAGAWAAWSFFATGPQPAEALPGSTIAYASVDLDPS GGQKIEALRTLRKFPAFKDHIGLQTDDDVRQRIFEEIQGSGACPDLDYGDDVEPWLGDRIAVAAVDAGEDALSPVFVLQV SDEDQADQGLAKIQDCSGGDGGAWSIADGWALVGETQEIVDRVAADAAKSPLSDDEDYRTWTDAAGDAGIATAYLAPEAG QVLADNLGGLMPPMYGLGEAVPGSDTDLMPSEVTQGLEEFRGLAATLRFDDGSLELEVAADTGRSQDALDGADGGDDVLA TLPDDTAAALGLGFADGWFGDLVDQFAGQLGGDLSGDELLDELSSESGLDLPEDVETLTGESAALAIGGDFDLETFVNST DGSGVPVGLKVQGDPDAIETVLDKLRPQLDGAESFLGSDSDGDLIAIGPDGDYRQQLLEDGDLGDSEVFENVVREAGDAA AILFVNFDAGDWLASLADGDPEVEENLEPLQGLGLSGWLQDDASHVVLRLTTD
Sequences:
>Translated_533_residues MENSPEYLESGAGEPLRTPSEPTGGGRRRTGWIVGGAVAFVALVGAGAWAAWSFFATGPQPAEALPGSTIAYASVDLDPS GGQKIEALRTLRKFPAFKDHIGLQTDDDVRQRIFEEIQGSGACPDLDYGDDVEPWLGDRIAVAAVDAGEDALSPVFVLQV SDEDQADQGLAKIQDCSGGDGGAWSIADGWALVGETQEIVDRVAADAAKSPLSDDEDYRTWTDAAGDAGIATAYLAPEAG QVLADNLGGLMPPMYGLGEAVPGSDTDLMPSEVTQGLEEFRGLAATLRFDDGSLELEVAADTGRSQDALDGADGGDDVLA TLPDDTAAALGLGFADGWFGDLVDQFAGQLGGDLSGDELLDELSSESGLDLPEDVETLTGESAALAIGGDFDLETFVNST DGSGVPVGLKVQGDPDAIETVLDKLRPQLDGAESFLGSDSDGDLIAIGPDGDYRQQLLEDGDLGDSEVFENVVREAGDAA AILFVNFDAGDWLASLADGDPEVEENLEPLQGLGLSGWLQDDASHVVLRLTTD >Mature_533_residues MENSPEYLESGAGEPLRTPSEPTGGGRRRTGWIVGGAVAFVALVGAGAWAAWSFFATGPQPAEALPGSTIAYASVDLDPS GGQKIEALRTLRKFPAFKDHIGLQTDDDVRQRIFEEIQGSGACPDLDYGDDVEPWLGDRIAVAAVDAGEDALSPVFVLQV SDEDQADQGLAKIQDCSGGDGGAWSIADGWALVGETQEIVDRVAADAAKSPLSDDEDYRTWTDAAGDAGIATAYLAPEAG QVLADNLGGLMPPMYGLGEAVPGSDTDLMPSEVTQGLEEFRGLAATLRFDDGSLELEVAADTGRSQDALDGADGGDDVLA TLPDDTAAALGLGFADGWFGDLVDQFAGQLGGDLSGDELLDELSSESGLDLPEDVETLTGESAALAIGGDFDLETFVNST DGSGVPVGLKVQGDPDAIETVLDKLRPQLDGAESFLGSDSDGDLIAIGPDGDYRQQLLEDGDLGDSEVFENVVREAGDAA AILFVNFDAGDWLASLADGDPEVEENLEPLQGLGLSGWLQDDASHVVLRLTTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55345; Mature: 55345
Theoretical pI: Translated: 3.50; Mature: 3.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENSPEYLESGAGEPLRTPSEPTGGGRRRTGWIVGGAVAFVALVGAGAWAAWSFFATGPQ CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHCCCCC PAEALPGSTIAYASVDLDPSGGQKIEALRTLRKFPAFKDHIGLQTDDDVRQRIFEEIQGS CHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCC GACPDLDYGDDVEPWLGDRIAVAAVDAGEDALSPVFVLQVSDEDQADQGLAKIQDCSGGD CCCCCCCCCCCCCHHCCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC GGAWSIADGWALVGETQEIVDRVAADAAKSPLSDDEDYRTWTDAAGDAGIATAYLAPEAG CCEEEECCCEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCC QVLADNLGGLMPPMYGLGEAVPGSDTDLMPSEVTQGLEEFRGLAATLRFDDGSLELEVAA HHHHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC DTGRSQDALDGADGGDDVLATLPDDTAAALGLGFADGWFGDLVDQFAGQLGGDLSGDELL CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHH DELSSESGLDLPEDVETLTGESAALAIGGDFDLETFVNSTDGSGVPVGLKVQGDPDAIET HHHCCCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCEEEEEECCCHHHHHH VLDKLRPQLDGAESFLGSDSDGDLIAIGPDGDYRQQLLEDGDLGDSEVFENVVREAGDAA HHHHHCCCCCCHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEE AILFVNFDAGDWLASLADGDPEVEENLEPLQGLGLSGWLQDDASHVVLRLTTD EEEEEEECCHHHHHHHCCCCCCHHHCCCHHHCCCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure MENSPEYLESGAGEPLRTPSEPTGGGRRRTGWIVGGAVAFVALVGAGAWAAWSFFATGPQ CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHCCCCC PAEALPGSTIAYASVDLDPSGGQKIEALRTLRKFPAFKDHIGLQTDDDVRQRIFEEIQGS CHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCC GACPDLDYGDDVEPWLGDRIAVAAVDAGEDALSPVFVLQVSDEDQADQGLAKIQDCSGGD CCCCCCCCCCCCCHHCCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC GGAWSIADGWALVGETQEIVDRVAADAAKSPLSDDEDYRTWTDAAGDAGIATAYLAPEAG CCEEEECCCEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCC QVLADNLGGLMPPMYGLGEAVPGSDTDLMPSEVTQGLEEFRGLAATLRFDDGSLELEVAA HHHHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC DTGRSQDALDGADGGDDVLATLPDDTAAALGLGFADGWFGDLVDQFAGQLGGDLSGDELL CCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHH DELSSESGLDLPEDVETLTGESAALAIGGDFDLETFVNSTDGSGVPVGLKVQGDPDAIET HHHCCCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCEEEEEECCCHHHHHH VLDKLRPQLDGAESFLGSDSDGDLIAIGPDGDYRQQLLEDGDLGDSEVFENVVREAGDAA HHHHHCCCCCCHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEE AILFVNFDAGDWLASLADGDPEVEENLEPLQGLGLSGWLQDDASHVVLRLTTD EEEEEEECCHHHHHHHCCCCCCHHHCCCHHHCCCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA