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The map label for this gene is ybgJ [H]

Identifier: 119717201

GI number: 119717201

Start: 3164369

End: 3164980

Strand: Reverse

Name: ybgJ [H]

Synonym: Noca_2977

Alternate gene names: 119717201

Gene position: 3164980-3164369 (Counterclockwise)

Preceding gene: 119717202

Following gene: 119717200

Centisome position: 63.48

GC content: 76.96

Gene sequence:

>612_bases
ATGCTGGATCTCATGCCTGTGCAGCTGCGTCCCTTCGGCGACACCGCCGCTCTCGCCGAGGTCGGCGACGCCACGACGGC
CCTCGCCCTGGCCACCTGGGCGCGCGCGAGCGGCCTGGCCGCGCTCGAGATCGTGCCGGCCGCGGAGACGGTGCTGTTCG
ACGGCGTGGCCGATCTCGGCGCGCTCGCGGCGGCGCTGGCGTCCTGGTCGCCCTCCGACGCGCGGCCGGACGGAGTGCTG
GTGGAGGTGCCGGTGACCTACGACGGCCCCGACCTGGCGGCCGTGGCCCAGGCGTGGGGCACCGACGCCGAGGGAGTCGT
GCGCCGCCACTCCTCGACGGAGTACGTCGCGTCCTTCTGCGGGTTCGCCCCCGGGTTCGCCTACCTGGCCGGGCTGCCCG
CGGAGCTCGCCGTACCCCGTCTGGAGTCGCCGCGCCCGCGGGTCCCCGCAGGGTCGGTCGGCCTGGCGGGACCGTGGTGC
GGTGTCTACCCGTCGGCGTCACCCGGCGGCTGGCGGCTGCTCGGCCGCACCGACGCGGTGTTGTGGGACCCCGACCGGGA
GCGGCCGGCGCTGCTCGCCCCCGGCACCCGCGTCCGGTTCGTGCCGGCATGA

Upstream 100 bases:

>100_bases
TCGGAGGGCCGGTTCGGTCGACCGGGCGTCACCGTCTCCGGTCGAGCCGAGGGGCTCCTGGTGCTCATACCACCGGGAGC
CCCTCACCCATTTCCCCGCC

Downstream 100 bases:

>100_bases
GCACGCACCCGAGCCTGCACGTGCTGGCGGCCGGGCCGCTGACGCTGGTCCAGGACCGGGGCCGGTCCGGGCTGGCGCAC
CTCGGCGTCCCGCGGGCCGG

Product: allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MLDLMPVQLRPFGDTAALAEVGDATTALALATWARASGLAALEIVPAAETVLFDGVADLGALAAALASWSPSDARPDGVL
VEVPVTYDGPDLAAVAQAWGTDAEGVVRRHSSTEYVASFCGFAPGFAYLAGLPAELAVPRLESPRPRVPAGSVGLAGPWC
GVYPSASPGGWRLLGRTDAVLWDPDRERPALLAPGTRVRFVPA

Sequences:

>Translated_203_residues
MLDLMPVQLRPFGDTAALAEVGDATTALALATWARASGLAALEIVPAAETVLFDGVADLGALAAALASWSPSDARPDGVL
VEVPVTYDGPDLAAVAQAWGTDAEGVVRRHSSTEYVASFCGFAPGFAYLAGLPAELAVPRLESPRPRVPAGSVGLAGPWC
GVYPSASPGGWRLLGRTDAVLWDPDRERPALLAPGTRVRFVPA
>Mature_203_residues
MLDLMPVQLRPFGDTAALAEVGDATTALALATWARASGLAALEIVPAAETVLFDGVADLGALAAALASWSPSDARPDGVL
VEVPVTYDGPDLAAVAQAWGTDAEGVVRRHSSTEYVASFCGFAPGFAYLAGLPAELAVPRLESPRPRVPAGSVGLAGPWC
GVYPSASPGGWRLLGRTDAVLWDPDRERPALLAPGTRVRFVPA

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=138, Percent_Identity=53.6231884057971, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 20943; Mature: 20943

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLMPVQLRPFGDTAALAEVGDATTALALATWARASGLAALEIVPAAETVLFDGVADLG
CCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCHHHHH
ALAAALASWSPSDARPDGVLVEVPVTYDGPDLAAVAQAWGTDAEGVVRRHSSTEYVASFC
HHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
GFAPGFAYLAGLPAELAVPRLESPRPRVPAGSVGLAGPWCGVYPSASPGGWRLLGRTDAV
CCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEE
LWDPDRERPALLAPGTRVRFVPA
EECCCCCCCEEECCCCEEEEECC
>Mature Secondary Structure
MLDLMPVQLRPFGDTAALAEVGDATTALALATWARASGLAALEIVPAAETVLFDGVADLG
CCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCHHHHH
ALAAALASWSPSDARPDGVLVEVPVTYDGPDLAAVAQAWGTDAEGVVRRHSSTEYVASFC
HHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
GFAPGFAYLAGLPAELAVPRLESPRPRVPAGSVGLAGPWCGVYPSASPGGWRLLGRTDAV
CCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEE
LWDPDRERPALLAPGTRVRFVPA
EECCCCCCCEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]