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The map label for this gene is yfdE [H]

Identifier: 119715059

GI number: 119715059

Start: 855501

End: 856640

Strand: Reverse

Name: yfdE [H]

Synonym: Noca_0812

Alternate gene names: 119715059

Gene position: 856640-855501 (Counterclockwise)

Preceding gene: 119715064

Following gene: 119715058

Centisome position: 17.18

GC content: 67.98

Gene sequence:

>1140_bases
ATGGCTGGACCGTTGGCCGGGATGCGCGTGATCGAGCTTGCAGGAATCGGCCCTGGACCTTTCTGCGGCATGCTCCTCGG
GGACCTGGGAGCCGACGTGGTCGTCATCGAGAGGCCGCTCCCAGCTGGGCCTGAGGCAGCCCTGGTCGACAACGGGATGT
TGCGCCGCAACCGCAGGTCGCTCGTGGCCGATCTGAAGAGTCCTGGGTCGGCGGACATGGTGCTGGACCTCGTGCGCGAG
GCAGACATCATCTTCGAGGGCATGCGGCCCGGCGTGGCAGAACGGCTGGGCGTCGGACCCGAGGCCTGCCTGGCCGTGAA
CCCTCGAGTCGTGTACGGGCGCATGACGGGCTGGGGCCAGCACGGCCCACTGGCCCGGCGAGCTGGGCACGATCTCAACT
ACATCTCAATGACCGGGGTGTTGAACCTCATTGGCCACGACCGCCCCGCGCCGCCGTTGAACCTCGTCGGCGACTTCGGT
GGCGGGGCGATGCTGCTCGCCGTCGGACTCCTGGCCGCCGTCACCCATGCTCGCACCACGGGCGAGGGCCAGGTCGTCGA
TGCCGCCATGTTCGACGGCACCAATCTGCTCATGACGATGTTCTGGGACGCTTACAGCAAAGGCAGCTGGATCGACCGCC
GAGCGAGCAACATCCTCAACGACGGCTCGCCCTTCAACACCGTGTACCAGTGCAGGGATGGATCGTGGCTCGCGGTCGCG
CCCATCGAACCGCAGTTCCGCGAGCGGATGATGAGCCTGATGGAACTGACCATCGAACCGGGCGAGTTGGGGCTCGACCG
CGAGATGTGGCCGGCGCTCGAGGCGAAGCTGCGGACCGCATTTGCCAGCCGAGACAGGGACGAGTGGCTGAGGCTGTTGT
CCGGTAGCGACACGTGCGTCACGCCGGTGCTCGGCCTGGACGAGGTCCCCCTGACTGCGCACGCGAGGGCGCGCGGCTCT
TTCCTCCCGGCTCCGCGGGGTGGCCAGCAACCGGCCCCCGCTCCCCGGTTCAGCGTCACCACACCTGCCGACCCAGCTCT
GCCGCCGGCGTACGGGGCAGACACCGACACGGTTCTGGCCGAGATCGGCTACTCCCCCGAACGCATCGCCTGCTTGCGCG
AAGTGGGGGCCATCTCATGA

Upstream 100 bases:

>100_bases
ACGTCCGGGCCTGGTCCGAGTTGGTGGCGTGGGTCACAGTGGCGATGTTAACGAACGTTCGTTAGCCTGACAAGGATCGC
GTTGCACGGAGGAGGGATCG

Downstream 100 bases:

>100_bases
CCGAGGAAGCGGTGCTGACGTCCCAGCGGGACGGCGTGCTGGTCGTCACCCTGAACCGGCCGAACATGCGCAACGCGATC
AACGAGGAGCTCTCGCTCGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MAGPLAGMRVIELAGIGPGPFCGMLLGDLGADVVVIERPLPAGPEAALVDNGMLRRNRRSLVADLKSPGSADMVLDLVRE
ADIIFEGMRPGVAERLGVGPEACLAVNPRVVYGRMTGWGQHGPLARRAGHDLNYISMTGVLNLIGHDRPAPPLNLVGDFG
GGAMLLAVGLLAAVTHARTTGEGQVVDAAMFDGTNLLMTMFWDAYSKGSWIDRRASNILNDGSPFNTVYQCRDGSWLAVA
PIEPQFRERMMSLMELTIEPGELGLDREMWPALEAKLRTAFASRDRDEWLRLLSGSDTCVTPVLGLDEVPLTAHARARGS
FLPAPRGGQQPAPAPRFSVTTPADPALPPAYGADTDTVLAEIGYSPERIACLREVGAIS

Sequences:

>Translated_379_residues
MAGPLAGMRVIELAGIGPGPFCGMLLGDLGADVVVIERPLPAGPEAALVDNGMLRRNRRSLVADLKSPGSADMVLDLVRE
ADIIFEGMRPGVAERLGVGPEACLAVNPRVVYGRMTGWGQHGPLARRAGHDLNYISMTGVLNLIGHDRPAPPLNLVGDFG
GGAMLLAVGLLAAVTHARTTGEGQVVDAAMFDGTNLLMTMFWDAYSKGSWIDRRASNILNDGSPFNTVYQCRDGSWLAVA
PIEPQFRERMMSLMELTIEPGELGLDREMWPALEAKLRTAFASRDRDEWLRLLSGSDTCVTPVLGLDEVPLTAHARARGS
FLPAPRGGQQPAPAPRFSVTTPADPALPPAYGADTDTVLAEIGYSPERIACLREVGAIS
>Mature_378_residues
AGPLAGMRVIELAGIGPGPFCGMLLGDLGADVVVIERPLPAGPEAALVDNGMLRRNRRSLVADLKSPGSADMVLDLVREA
DIIFEGMRPGVAERLGVGPEACLAVNPRVVYGRMTGWGQHGPLARRAGHDLNYISMTGVLNLIGHDRPAPPLNLVGDFGG
GAMLLAVGLLAAVTHARTTGEGQVVDAAMFDGTNLLMTMFWDAYSKGSWIDRRASNILNDGSPFNTVYQCRDGSWLAVAP
IEPQFRERMMSLMELTIEPGELGLDREMWPALEAKLRTAFASRDRDEWLRLLSGSDTCVTPVLGLDEVPLTAHARARGSF
LPAPRGGQQPAPAPRFSVTTPADPALPPAYGADTDTVLAEIGYSPERIACLREVGAIS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=374, Percent_Identity=40.1069518716578, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI266456254, Length=374, Percent_Identity=40.1069518716578, Blast_Score=286, Evalue=2e-77,
Organism=Homo sapiens, GI266458393, Length=285, Percent_Identity=40, Blast_Score=215, Evalue=4e-56,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=42.8, Blast_Score=214, Evalue=1e-55,
Organism=Homo sapiens, GI42822893, Length=140, Percent_Identity=44.2857142857143, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=44.2857142857143, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI300863128, Length=384, Percent_Identity=25, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI300863124, Length=410, Percent_Identity=24.8780487804878, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI300863126, Length=374, Percent_Identity=23.5294117647059, Blast_Score=93, Evalue=5e-19,
Organism=Escherichia coli, GI87082093, Length=362, Percent_Identity=25.414364640884, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1788717, Length=205, Percent_Identity=32.1951219512195, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=25.5639097744361, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=351, Percent_Identity=33.048433048433, Blast_Score=198, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI32564160, Length=328, Percent_Identity=31.4024390243902, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24585488, Length=382, Percent_Identity=35.6020942408377, Blast_Score=241, Evalue=5e-64,
Organism=Drosophila melanogaster, GI24648431, Length=405, Percent_Identity=29.3827160493827, Blast_Score=125, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40398; Mature: 40267

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPLAGMRVIELAGIGPGPFCGMLLGDLGADVVVIERPLPAGPEAALVDNGMLRRNRRS
CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHH
LVADLKSPGSADMVLDLVREADIIFEGMRPGVAERLGVGPEACLAVNPRVVYGRMTGWGQ
HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHEEEECCEEEEEECCCCCC
HGPLARRAGHDLNYISMTGVLNLIGHDRPAPPLNLVGDFGGGAMLLAVGLLAAVTHARTT
CCCHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCC
GEGQVVDAAMFDGTNLLMTMFWDAYSKGSWIDRRASNILNDGSPFNTVYQCRDGSWLAVA
CCCCEEEEEHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEE
PIEPQFRERMMSLMELTIEPGELGLDREMWPALEAKLRTAFASRDRDEWLRLLSGSDTCV
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEE
TPVLGLDEVPLTAHARARGSFLPAPRGGQQPAPAPRFSVTTPADPALPPAYGADTDTVLA
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
EIGYSPERIACLREVGAIS
HCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGPLAGMRVIELAGIGPGPFCGMLLGDLGADVVVIERPLPAGPEAALVDNGMLRRNRRS
CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHH
LVADLKSPGSADMVLDLVREADIIFEGMRPGVAERLGVGPEACLAVNPRVVYGRMTGWGQ
HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHEEEECCEEEEEECCCCCC
HGPLARRAGHDLNYISMTGVLNLIGHDRPAPPLNLVGDFGGGAMLLAVGLLAAVTHARTT
CCCHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCC
GEGQVVDAAMFDGTNLLMTMFWDAYSKGSWIDRRASNILNDGSPFNTVYQCRDGSWLAVA
CCCCEEEEEHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEE
PIEPQFRERMMSLMELTIEPGELGLDREMWPALEAKLRTAFASRDRDEWLRLLSGSDTCV
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEE
TPVLGLDEVPLTAHARARGSFLPAPRGGQQPAPAPRFSVTTPADPALPPAYGADTDTVLA
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
EIGYSPERIACLREVGAIS
HCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]