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The map label for this gene is yliC [C]

Identifier: 119386508

GI number: 119386508

Start: 937889

End: 938833

Strand: Direct

Name: yliC [C]

Synonym: Pden_3801

Alternate gene names: 119386508

Gene position: 937889-938833 (Clockwise)

Preceding gene: 119386507

Following gene: 119386509

Centisome position: 54.21

GC content: 65.61

Gene sequence:

>945_bases
ATGCTCTATTACCTGCTGCGCCGCCTGCTGATGGCGGTGCCCGTCATGTTCCTGATCGCGCTGATCGTGTTCATGCTGTT
GCGGCTGACGCCGGGCGATCCGGCGCAGGCCATCGCCGGCGATCAGGCCAGCCCCGAGCAGATCGCCGCGATCCGCGACA
GCCTTGGCCTCGATGCGCCGCTGGCCACGCAGTTCACGACCTGGATCGGCAACATGCTGCGCGGCGATTTCGGCCATTCG
CTGATCTCGCAGCGCCCGGTGCTGGAGATGATCGGCCAGCGCATCGGCCCGACGCTGGCGCTGGCCACGGTCGCCATGGT
GCTGACCGTGGTGATCTCGCTGCCGCTGGGCGTCGTCGCCGCGCGCCGCCATGGCGGGCTGGTGGACCGGCTGGTCATGT
CGCTGTCGGTGCTGGGCTTTTCGGTGCCGATCTTCGTCATCGGCTATGTGCTGATCGGCATCTTCGCCGTGCATCTGAAA
TGGTTCCCGGTGCAGGGCTACAGGCCGCTGGCCGAGGGGTTCTGGCCCTTCCTGCACCGCATCTTCCTGCCCGGGCTTGC
GCTTTCCTTGATCTATATCGCGCTGGTTTCGCGCATGACGCGGGCCGCCATGCTCGAGGTGCTGCGCGAGGATTACATCC
GCACCGCCCGCGCCAAGGGTCTGTCCGAGCGGGTGATCCTGTTCCGCCACGCGCTGCGCAATGCCGCCATCCCGATCCTG
ACCGTGGTCGGCACCGGCTTTGCCATGATGATCTCGGGCGTGGTGGTGACAGAGACGGTGTTCAACGTCCCCGGCCTTGG
CCGGCTGGTGGTCGATGCGGTTCTGGCGCGGGATTATCCGCTGATCCAGGCGATCATCCTGCTGACCGCCGGCACCTATG
TCGTGATCAACCTGCTGATCGACATCTCCTATGCGCTGACCGATCCGAGGATACGCTACCAATGA

Upstream 100 bases:

>100_bases
CCCGGTCCGATCACCCTGTTCTGGGGCGTGAAGAAGCCCGAATAAGCAGGTCCGGGCGCGCGGGCCTTGCCCGCGCCCCG
ACGCTTCACGAGAGGTCGCC

Downstream 100 bases:

>100_bases
CGACGCCCCTGAATCCCGCGCTGCCGCGCCGCCGGCTGGCAGGCAACCTGCCGCATTGGACCGTCATCCTGTCGCTGGCG
ATCCTTGCCGCCGCCCTTGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLYYLLRRLLMAVPVMFLIALIVFMLLRLTPGDPAQAIAGDQASPEQIAAIRDSLGLDAPLATQFTTWIGNMLRGDFGHS
LISQRPVLEMIGQRIGPTLALATVAMVLTVVISLPLGVVAARRHGGLVDRLVMSLSVLGFSVPIFVIGYVLIGIFAVHLK
WFPVQGYRPLAEGFWPFLHRIFLPGLALSLIYIALVSRMTRAAMLEVLREDYIRTARAKGLSERVILFRHALRNAAIPIL
TVVGTGFAMMISGVVVTETVFNVPGLGRLVVDAVLARDYPLIQAIILLTAGTYVVINLLIDISYALTDPRIRYQ

Sequences:

>Translated_314_residues
MLYYLLRRLLMAVPVMFLIALIVFMLLRLTPGDPAQAIAGDQASPEQIAAIRDSLGLDAPLATQFTTWIGNMLRGDFGHS
LISQRPVLEMIGQRIGPTLALATVAMVLTVVISLPLGVVAARRHGGLVDRLVMSLSVLGFSVPIFVIGYVLIGIFAVHLK
WFPVQGYRPLAEGFWPFLHRIFLPGLALSLIYIALVSRMTRAAMLEVLREDYIRTARAKGLSERVILFRHALRNAAIPIL
TVVGTGFAMMISGVVVTETVFNVPGLGRLVVDAVLARDYPLIQAIILLTAGTYVVINLLIDISYALTDPRIRYQ
>Mature_314_residues
MLYYLLRRLLMAVPVMFLIALIVFMLLRLTPGDPAQAIAGDQASPEQIAAIRDSLGLDAPLATQFTTWIGNMLRGDFGHS
LISQRPVLEMIGQRIGPTLALATVAMVLTVVISLPLGVVAARRHGGLVDRLVMSLSVLGFSVPIFVIGYVLIGIFAVHLK
WFPVQGYRPLAEGFWPFLHRIFLPGLALSLIYIALVSRMTRAAMLEVLREDYIRTARAKGLSERVILFRHALRNAAIPIL
TVVGTGFAMMISGVVVTETVFNVPGLGRLVVDAVLARDYPLIQAIILLTAGTYVVINLLIDISYALTDPRIRYQ

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=44.2675159235669, Blast_Score=271, Evalue=3e-74,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=38.4615384615385, Blast_Score=234, Evalue=5e-63,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=39.6825396825397, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=37.4603174603175, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=37.8048780487805, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1788504, Length=359, Percent_Identity=28.6908077994429, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787550, Length=332, Percent_Identity=27.1084337349398, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34456; Mature: 34456

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]