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The map label for this gene is yliB [C]

Identifier: 119386507

GI number: 119386507

Start: 936241

End: 937833

Strand: Direct

Name: yliB [C]

Synonym: Pden_3800

Alternate gene names: 119386507

Gene position: 936241-937833 (Clockwise)

Preceding gene: 119386506

Following gene: 119386508

Centisome position: 54.11

GC content: 65.91

Gene sequence:

>1593_bases
ATGATGACGATTTCGGGACTTCGCGCCCTTGGATGGGCCGCCATGGCGGCGGGTTTGCTCCACGCCGGGCCGGCTTCGGC
CGAGACGGTGCTGAACGTGGTGATGCAGGCGCCGCTGCGCACGCTGGATCCGCATCTGAGCACGGCGCAGATCGTGCGGA
CGCATGGTTTCATGGTCTTCGACACGCTTCTGGGCATGGATGCGGATTACAAGCCGCAGCCGCAGATGGCGGATTACCAG
GTTTCGGACGACGGGCTGACCTATACCTTCACCCTGCGCGACGGGCTGACATGGCATGACGGCAGCCCGGTCGCGGCCGA
GGATTGCGTCGCCTCGCTGAAACGCTGGGCCGAGAACGATCCGGCCGGGCGCAAGATGATGGAATATGTCGCCTCGATCG
AGACGACCTCGGACAAGGTGCTGGTGCTGACGCTGGCCCGTCCCTTCGGCCATGTGCTGGACCTGCTGGCCAAGCCTTCG
CCGGTGCCGCCCTTCATGATGCCCAAGCGCCTGGCCGAGACGCCCTCGGGCGAGCAGGTGGCCGAGATGGTCGGCTCGGG
CCCGTTCAAGTTCGTCGCCGAGGAATACCGGCCCGGCGATCAGGCGGTCTATGTCAGGAACGAGGATTACCAGCCGCGCC
CCGAGCCGGCCAGCTGGACCGCCGGCGGCAAGGTGGTGAATGTCGACAAGGTGGTGTGGAAGGCGATGCCGGACATGCAG
ACCTCGATCAACGCGCTGCAATCGGGCGATGTGGATCTGATCGAGCAGGTGACCATCGACCTGCTGCCCCTGCTGCAAAT
GAACGACGAGGTGGAATACGGCGTCATCAACCCGCTGGGCAGCCAGGTCACGGGGCGCTTCAACCACCGACTGCCGCCCT
TTGACGATGCCGAGATCCGCCGCGCCGCCATGTATGCGCTGGATCAGGAGCAGTTGATGCAGACCGCCATCGGCGACCCG
GAATACTACACGCTCTGCGCCTCGGATTACGGCTGCGAGGTGCCGCTGGCGTCGGATGCCGGCTCGGAATACCTGGCCGG
CAGCGCCGAGGAGCGCATGGCCAAGGCGCAGGAGATCCTGAAGGCCGCAGGCTATGACGGAACCCCGGTGCTGATGATGC
AGCCGACCGACCTGACCATCCTGTCCACCCAGCCCATCGTCGCCGCCGAGCGGCTGCGCGAGGCCGGCTTTGCGGTCGAG
GTCGCCTCGATGGACTGGGCCACGCTGCAATCGCGCAAGAACGGCTGGCAGCCGGTGGCCGAGGGCGGCTGGAACATGCT
CTTTACCTATTGGGGCGTGACCGGGATCTGGAACCCGCTGGTCCATGCGCTGCTGGATGGCTCGGGCAGCGACAACGCCT
GGTCCGGCTGGCCGGTCAGCCCCGAGATCGAGGCGCTGCGCGAGCAGTATCTGGTCGCCACCGACCTGGACGAGCAAAAG
CGCATCGCCGCCGAGATCCAGCAGATCGCCTATGACCAGGGCTTCTACTACAATGCCGGCGAGTTCCAGTCGGTCGCCGC
CTGGCGGGACGGGATCACCGAGCTGCAACCCGGTCCGATCACCCTGTTCTGGGGCGTGAAGAAGCCCGAATAA

Upstream 100 bases:

>100_bases
CGGATGTGCGGCTGATCCCCTATCGCCGGCTGGACGTCACCCGGGCATGGCCGTGGTGCGAACTGCCGGAAATCACAAAA
GAACCAGAAACAGGAGAGGT

Downstream 100 bases:

>100_bases
GCAGGTCCGGGCGCGCGGGCCTTGCCCGCGCCCCGACGCTTCACGAGAGGTCGCCATGCTCTATTACCTGCTGCGCCGCC
TGCTGATGGCGGTGCCCGTC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MMTISGLRALGWAAMAAGLLHAGPASAETVLNVVMQAPLRTLDPHLSTAQIVRTHGFMVFDTLLGMDADYKPQPQMADYQ
VSDDGLTYTFTLRDGLTWHDGSPVAAEDCVASLKRWAENDPAGRKMMEYVASIETTSDKVLVLTLARPFGHVLDLLAKPS
PVPPFMMPKRLAETPSGEQVAEMVGSGPFKFVAEEYRPGDQAVYVRNEDYQPRPEPASWTAGGKVVNVDKVVWKAMPDMQ
TSINALQSGDVDLIEQVTIDLLPLLQMNDEVEYGVINPLGSQVTGRFNHRLPPFDDAEIRRAAMYALDQEQLMQTAIGDP
EYYTLCASDYGCEVPLASDAGSEYLAGSAEERMAKAQEILKAAGYDGTPVLMMQPTDLTILSTQPIVAAERLREAGFAVE
VASMDWATLQSRKNGWQPVAEGGWNMLFTYWGVTGIWNPLVHALLDGSGSDNAWSGWPVSPEIEALREQYLVATDLDEQK
RIAAEIQQIAYDQGFYYNAGEFQSVAAWRDGITELQPGPITLFWGVKKPE

Sequences:

>Translated_530_residues
MMTISGLRALGWAAMAAGLLHAGPASAETVLNVVMQAPLRTLDPHLSTAQIVRTHGFMVFDTLLGMDADYKPQPQMADYQ
VSDDGLTYTFTLRDGLTWHDGSPVAAEDCVASLKRWAENDPAGRKMMEYVASIETTSDKVLVLTLARPFGHVLDLLAKPS
PVPPFMMPKRLAETPSGEQVAEMVGSGPFKFVAEEYRPGDQAVYVRNEDYQPRPEPASWTAGGKVVNVDKVVWKAMPDMQ
TSINALQSGDVDLIEQVTIDLLPLLQMNDEVEYGVINPLGSQVTGRFNHRLPPFDDAEIRRAAMYALDQEQLMQTAIGDP
EYYTLCASDYGCEVPLASDAGSEYLAGSAEERMAKAQEILKAAGYDGTPVLMMQPTDLTILSTQPIVAAERLREAGFAVE
VASMDWATLQSRKNGWQPVAEGGWNMLFTYWGVTGIWNPLVHALLDGSGSDNAWSGWPVSPEIEALREQYLVATDLDEQK
RIAAEIQQIAYDQGFYYNAGEFQSVAAWRDGITELQPGPITLFWGVKKPE
>Mature_530_residues
MMTISGLRALGWAAMAAGLLHAGPASAETVLNVVMQAPLRTLDPHLSTAQIVRTHGFMVFDTLLGMDADYKPQPQMADYQ
VSDDGLTYTFTLRDGLTWHDGSPVAAEDCVASLKRWAENDPAGRKMMEYVASIETTSDKVLVLTLARPFGHVLDLLAKPS
PVPPFMMPKRLAETPSGEQVAEMVGSGPFKFVAEEYRPGDQAVYVRNEDYQPRPEPASWTAGGKVVNVDKVVWKAMPDMQ
TSINALQSGDVDLIEQVTIDLLPLLQMNDEVEYGVINPLGSQVTGRFNHRLPPFDDAEIRRAAMYALDQEQLMQTAIGDP
EYYTLCASDYGCEVPLASDAGSEYLAGSAEERMAKAQEILKAAGYDGTPVLMMQPTDLTILSTQPIVAAERLREAGFAVE
VASMDWATLQSRKNGWQPVAEGGWNMLFTYWGVTGIWNPLVHALLDGSGSDNAWSGWPVSPEIEALREQYLVATDLDEQK
RIAAEIQQIAYDQGFYYNAGEFQSVAAWRDGITELQPGPITLFWGVKKPE

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=437, Percent_Identity=24.9427917620137, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1789397, Length=421, Percent_Identity=28.0285035629454, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1787495, Length=424, Percent_Identity=26.1792452830189, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789887, Length=519, Percent_Identity=24.6628131021195, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787762, Length=440, Percent_Identity=24.0909090909091, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58236; Mature: 58236

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTISGLRALGWAAMAAGLLHAGPASAETVLNVVMQAPLRTLDPHLSTAQIVRTHGFMVF
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHCCHHHH
DTLLGMDADYKPQPQMADYQVSDDGLTYTFTLRDGLTWHDGSPVAAEDCVASLKRWAEND
HHHHCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHCCC
PAGRKMMEYVASIETTSDKVLVLTLARPFGHVLDLLAKPSPVPPFMMPKRLAETPSGEQV
CHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHH
AEMVGSGPFKFVAEEYRPGDQAVYVRNEDYQPRPEPASWTAGGKVVNVDKVVWKAMPDMQ
HHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCHH
TSINALQSGDVDLIEQVTIDLLPLLQMNDEVEYGVINPLGSQVTGRFNHRLPPFDDAEIR
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCHHCCCCCCCCHHHHH
RAAMYALDQEQLMQTAIGDPEYYTLCASDYGCEVPLASDAGSEYLAGSAEERMAKAQEIL
HHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
KAAGYDGTPVLMMQPTDLTILSTQPIVAAERLREAGFAVEVASMDWATLQSRKNGWQPVA
HHCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCHH
EGGWNMLFTYWGVTGIWNPLVHALLDGSGSDNAWSGWPVSPEIEALREQYLVATDLDEQK
CCCCEEEEEHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCHHH
RIAAEIQQIAYDQGFYYNAGEFQSVAAWRDGITELQPGPITLFWGVKKPE
HHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MMTISGLRALGWAAMAAGLLHAGPASAETVLNVVMQAPLRTLDPHLSTAQIVRTHGFMVF
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHCCHHHH
DTLLGMDADYKPQPQMADYQVSDDGLTYTFTLRDGLTWHDGSPVAAEDCVASLKRWAEND
HHHHCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHCCC
PAGRKMMEYVASIETTSDKVLVLTLARPFGHVLDLLAKPSPVPPFMMPKRLAETPSGEQV
CHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHH
AEMVGSGPFKFVAEEYRPGDQAVYVRNEDYQPRPEPASWTAGGKVVNVDKVVWKAMPDMQ
HHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCHH
TSINALQSGDVDLIEQVTIDLLPLLQMNDEVEYGVINPLGSQVTGRFNHRLPPFDDAEIR
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCHHCCCCCCCCHHHHH
RAAMYALDQEQLMQTAIGDPEYYTLCASDYGCEVPLASDAGSEYLAGSAEERMAKAQEIL
HHHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHH
KAAGYDGTPVLMMQPTDLTILSTQPIVAAERLREAGFAVEVASMDWATLQSRKNGWQPVA
HHCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCHH
EGGWNMLFTYWGVTGIWNPLVHALLDGSGSDNAWSGWPVSPEIEALREQYLVATDLDEQK
CCCCEEEEEHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCHHH
RIAAEIQQIAYDQGFYYNAGEFQSVAAWRDGITELQPGPITLFWGVKKPE
HHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]