Click here to switch to the map view.

The map label for this gene is yliD [C]

Identifier: 119386509

GI number: 119386509

Start: 938830

End: 939693

Strand: Direct

Name: yliD [C]

Synonym: Pden_3802

Alternate gene names: 119386509

Gene position: 938830-939693 (Clockwise)

Preceding gene: 119386508

Following gene: 119386510

Centisome position: 54.26

GC content: 68.87

Gene sequence:

>864_bases
ATGACGACGCCCCTGAATCCCGCGCTGCCGCGCCGCCGGCTGGCAGGCAACCTGCCGCATTGGACCGTCATCCTGTCGCT
GGCGATCCTTGCCGCCGCCCTTGCCATGGCGATCCTTGCCCCGCAGCTGGCGAATTTCGAGCCGACGCGGATCAATGCCG
CCATGCGGCTGCAACCCGCATCCGAGACCTATTGGCTGGGCACCGACAGCTTCGGCCGCGACCTTTATTCCCGCATCATC
CATGGCGCCCGCGTCTCGCTGGTGGTGGGGGCTGGCGTGGCGGCGGGCGCGATCCTGATCGGCCTGCCGCTGGGCCTGCT
GGCCGGCTGGTTCCGCGGCCTCGACGCGGTGCTGATGCGGCTGATGGACGGGATGATGGCCATTCCCGGCATCCTGCTGG
CCATCGCCATCGTCGCACTGACCAAGGCGGGGCTGGTCACGGTCATCATCGCCATCATGATCCCCGAGATCCCGCAGGTG
GTGCGGCTGGTACGCTCGCGCGTGCTGGCGGCGCGGGCCGAACCCTATGTCGAGGCAGCCCAGCTGCTGGGCACGCCCGC
GCCCCGGCTGATCCTGCGCCACCTGCTGCCGGCGACCATCGCGCCGCTGATCGTGCAGGCGACCTATATCTACGCCTCCG
CCATCCTGACCGAGGCGGCGCTGTCCTTCCTGGGCGTCGGCATCGGCACCGAGATCCCGACCTGGGGCAACATCATGGCC
GAGGGGCGGCTTTACTTCGCCATGCGGCCCTGGCTGGTATTCTGGCCGGCCATCGTGCTGTCGCTGTGCATCCTGTCGAT
CAACCTTCTGGGCGACGCGCTGCGCGACCGCCTGGACCCGAAGATGAAGGGGAGGGCCGATTGA

Upstream 100 bases:

>100_bases
TGATCCAGGCGATCATCCTGCTGACCGCCGGCACCTATGTCGTGATCAACCTGCTGATCGACATCTCCTATGCGCTGACC
GATCCGAGGATACGCTACCA

Downstream 100 bases:

>100_bases
TGGCCGATCACGCCAATGCCGCCCAGCCGGTGCTGTCGATCCGCGACCTGCGCGTCTCGACCTGCGGCCGCGAGCCGGTC
GAGATCCTCAAGGGCATCGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTTPLNPALPRRRLAGNLPHWTVILSLAILAAALAMAILAPQLANFEPTRINAAMRLQPASETYWLGTDSFGRDLYSRII
HGARVSLVVGAGVAAGAILIGLPLGLLAGWFRGLDAVLMRLMDGMMAIPGILLAIAIVALTKAGLVTVIIAIMIPEIPQV
VRLVRSRVLAARAEPYVEAAQLLGTPAPRLILRHLLPATIAPLIVQATYIYASAILTEAALSFLGVGIGTEIPTWGNIMA
EGRLYFAMRPWLVFWPAIVLSLCILSINLLGDALRDRLDPKMKGRAD

Sequences:

>Translated_287_residues
MTTPLNPALPRRRLAGNLPHWTVILSLAILAAALAMAILAPQLANFEPTRINAAMRLQPASETYWLGTDSFGRDLYSRII
HGARVSLVVGAGVAAGAILIGLPLGLLAGWFRGLDAVLMRLMDGMMAIPGILLAIAIVALTKAGLVTVIIAIMIPEIPQV
VRLVRSRVLAARAEPYVEAAQLLGTPAPRLILRHLLPATIAPLIVQATYIYASAILTEAALSFLGVGIGTEIPTWGNIMA
EGRLYFAMRPWLVFWPAIVLSLCILSINLLGDALRDRLDPKMKGRAD
>Mature_286_residues
TTPLNPALPRRRLAGNLPHWTVILSLAILAAALAMAILAPQLANFEPTRINAAMRLQPASETYWLGTDSFGRDLYSRIIH
GARVSLVVGAGVAAGAILIGLPLGLLAGWFRGLDAVLMRLMDGMMAIPGILLAIAIVALTKAGLVTVIIAIMIPEIPQVV
RLVRSRVLAARAEPYVEAAQLLGTPAPRLILRHLLPATIAPLIVQATYIYASAILTEAALSFLGVGIGTEIPTWGNIMAE
GRLYFAMRPWLVFWPAIVLSLCILSINLLGDALRDRLDPKMKGRAD

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=240, Percent_Identity=40.8333333333333, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI1787760, Length=263, Percent_Identity=39.9239543726236, Blast_Score=174, Evalue=9e-45,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=35.2697095435685, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789964, Length=257, Percent_Identity=38.9105058365759, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787498, Length=274, Percent_Identity=33.5766423357664, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787549, Length=214, Percent_Identity=34.5794392523364, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788505, Length=244, Percent_Identity=30.327868852459, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30782; Mature: 30650

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPLNPALPRRRLAGNLPHWTVILSLAILAAALAMAILAPQLANFEPTRINAAMRLQPA
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHEEECCC
SETYWLGTDSFGRDLYSRIIHGARVSLVVGAGVAAGAILIGLPLGLLAGWFRGLDAVLMR
CCEEECCCCHHHHHHHHHHHCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMDGMMAIPGILLAIAIVALTKAGLVTVIIAIMIPEIPQVVRLVRSRVLAARAEPYVEAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHH
QLLGTPAPRLILRHLLPATIAPLIVQATYIYASAILTEAALSFLGVGIGTEIPTWGNIMA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHC
EGRLYFAMRPWLVFWPAIVLSLCILSINLLGDALRDRLDPKMKGRAD
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TTPLNPALPRRRLAGNLPHWTVILSLAILAAALAMAILAPQLANFEPTRINAAMRLQPA
CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHEEECCC
SETYWLGTDSFGRDLYSRIIHGARVSLVVGAGVAAGAILIGLPLGLLAGWFRGLDAVLMR
CCEEECCCCHHHHHHHHHHHCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMDGMMAIPGILLAIAIVALTKAGLVTVIIAIMIPEIPQVVRLVRSRVLAARAEPYVEAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHH
QLLGTPAPRLILRHLLPATIAPLIVQATYIYASAILTEAALSFLGVGIGTEIPTWGNIMA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHC
EGRLYFAMRPWLVFWPAIVLSLCILSINLLGDALRDRLDPKMKGRAD
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]