Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is cya3 [H]

Identifier: 119386185

GI number: 119386185

Start: 618747

End: 620537

Strand: Direct

Name: cya3 [H]

Synonym: Pden_3473

Alternate gene names: 119386185

Gene position: 618747-620537 (Clockwise)

Preceding gene: 119386181

Following gene: 119386186

Centisome position: 35.76

GC content: 67.9

Gene sequence:

>1791_bases
ATGCCCGAAAGGAGCCTTGGACGAGCCATGATCGCACAGCCCGGTCTGACCGGCCCCCGCCTTCAGGCGGTGCTTTATGC
CGACATTCACGGCTATACCCGCCTGATCGAGCAGGACGAGGCCGGCACGATCCTGCGGCTGACGCGCTCGATCGCGCTGA
TCCGCAACCTGGTCGGGGATTATGGCGGCACCGTGGTCAACACGGCCGGGGACGGGCTGGTCGCGGTGTTCCAGGATGCG
CCCAAGGCGCTGCATTTCGCGATCGAGATGCAGCGCGAACTGTCCCGCGAATCCGCCTGGGCCGAGGCGCGGGAGCCGAT
CGCCTGGCGCGTCGGCATCTCGCTGGGCGAGACGTTCGAGGGGCAGGAGGGGGTTTACGGCCACAGCGTCAACCTGGCCG
CGCGGATCCAGGGCTTTGCCGATCCCGGCGGCATCTGCGTCACCGAGACCGTCTATCGCATCGTGCGCGACAACCCGGAA
CTGGTGCTGCGTTCGCTGGGGCGGCGGCGGCTGAAGAACATCTCGGCCCCGGTCGAGATCTATGCCGCGGCGCCCGCCTC
CCCCGCCGCGGCCGCGGCCGTCCCGCTGCGAGCTGTGCCGCGCAGGGTCGATCCCGGCCTGCCCGACACGTCGCTGGCGA
TCCTGCCGATGGAGAATCTTTCGGCCGATCCCGGCGACCAGCACCTGTGCCATGGCATCGTCGCCGACCTGATCACCAAC
CTGTGCCGGTTCCGGCACCTGCTGGTGATCGCGCGGCATTCATCGTTCCTGGCCGCCGCCCAGACCTCGTCGCTGCGCGA
GATCGGGCGCCGGCTGGGCGTGCGCTACCTGATGACCAGCAGCTTTCGCCGGGCCGGCAACCGGCTGCGCATCACCGTCG
AGCTGGTCGAGGCGGAATCGGAAAATACCATCTGGTCCGAGCGCTACGACGGCGTGATGCTGGACATCTTCGACTTTCAG
GACGACGTGACCGCGATGACCGCCGCCCGGGTGGCGATCCAGCTGGACGCGAACGAACGGCGCCGGCTGGCCGAGCAGAG
CCATCCCGCGCTTTACGCCTATGGGCTGGTCCTGCGCGGCCAGGACATGGGCCTGCGCTTCCTGCCCGATGCCAACCTGC
ACGCCCGCCGCCTGTTCGAAGAGGCCCGCGATCTCGATCCCGACTACGGCCGCAGCTATGCGGCGATGTCGCGGACCTTC
AACGTCGAATGGCGCTACAACTGGACCAGCAACCCCGATGCGGCGCTGAACCAGGCGCTGGTCCTGGCCAAGCGGGCGGT
GCAATGCGACGCCCTGGACTCGCGCGGCTTTTCCGAGATGGGCCTGGCGCATCTCTACAAGAAGCAGCACGACGAGGCGC
TGGCCGCCTATGAGCACGCGCTGGCGCTGAATCCCAACGACGCGGATCTGCTGGCCTATACCGGCGACTGCCTCGCCTAT
GTCCGGCAGGGCGAGCGGGCGGTGCAGCTGCTGGAACGGGCGATGCGGCTCAATCCCTATTTCCCGGACGCCTATCTGTG
GTTCCTGGGCGATGCCTATTTCCACCACGGCGATTACGGCAAGACCATCGAAACCCTTTCGCGGATGCGCGACCAGTCCG
AGGCGCACCGGCTGCTGGCCGCCAGCCATGCGCTGCTGGGCCAGATGGACGAGGCCCGCCGCCATGCCGGCGCGGTGATG
CGGGTGCATCCGAACTTCACCATCGCGCATTGGCGCAAGGTGCCCCCGCTGAAACATGCCGAGGACCTGGAGCTTTACGT
CGAGGGCTTGCGAAAGGCCGGCCTGACCTGA

Upstream 100 bases:

>100_bases
GGATAGTATAGTGCCGATCCGGGCGCTGTCACGGATCCCCTTGCGGCAGGCCGGGCCGCCCCGATCCGGGCTTGACAGGC
CGGGTGCCGGTGGATTTCTG

Downstream 100 bases:

>100_bases
CGGCGGGCGGCGGTAAGGTCGCCCGCAGCGGCTATCGGGCCCGCCGCCTTGGTGGGCCGGGTCCGCGCCATCGTTTCCGG
CCCTGTCACTCTTTGGTCAA

Product: adenylyl cyclase class-3/4/guanylyl cyclase

Products: NA

Alternate protein names: ATP pyrophosphate-lyase 3; Adenylyl cyclase 3 [H]

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MPERSLGRAMIAQPGLTGPRLQAVLYADIHGYTRLIEQDEAGTILRLTRSIALIRNLVGDYGGTVVNTAGDGLVAVFQDA
PKALHFAIEMQRELSRESAWAEAREPIAWRVGISLGETFEGQEGVYGHSVNLAARIQGFADPGGICVTETVYRIVRDNPE
LVLRSLGRRRLKNISAPVEIYAAAPASPAAAAAVPLRAVPRRVDPGLPDTSLAILPMENLSADPGDQHLCHGIVADLITN
LCRFRHLLVIARHSSFLAAAQTSSLREIGRRLGVRYLMTSSFRRAGNRLRITVELVEAESENTIWSERYDGVMLDIFDFQ
DDVTAMTAARVAIQLDANERRRLAEQSHPALYAYGLVLRGQDMGLRFLPDANLHARRLFEEARDLDPDYGRSYAAMSRTF
NVEWRYNWTSNPDAALNQALVLAKRAVQCDALDSRGFSEMGLAHLYKKQHDEALAAYEHALALNPNDADLLAYTGDCLAY
VRQGERAVQLLERAMRLNPYFPDAYLWFLGDAYFHHGDYGKTIETLSRMRDQSEAHRLLAASHALLGQMDEARRHAGAVM
RVHPNFTIAHWRKVPPLKHAEDLELYVEGLRKAGLT

Sequences:

>Translated_596_residues
MPERSLGRAMIAQPGLTGPRLQAVLYADIHGYTRLIEQDEAGTILRLTRSIALIRNLVGDYGGTVVNTAGDGLVAVFQDA
PKALHFAIEMQRELSRESAWAEAREPIAWRVGISLGETFEGQEGVYGHSVNLAARIQGFADPGGICVTETVYRIVRDNPE
LVLRSLGRRRLKNISAPVEIYAAAPASPAAAAAVPLRAVPRRVDPGLPDTSLAILPMENLSADPGDQHLCHGIVADLITN
LCRFRHLLVIARHSSFLAAAQTSSLREIGRRLGVRYLMTSSFRRAGNRLRITVELVEAESENTIWSERYDGVMLDIFDFQ
DDVTAMTAARVAIQLDANERRRLAEQSHPALYAYGLVLRGQDMGLRFLPDANLHARRLFEEARDLDPDYGRSYAAMSRTF
NVEWRYNWTSNPDAALNQALVLAKRAVQCDALDSRGFSEMGLAHLYKKQHDEALAAYEHALALNPNDADLLAYTGDCLAY
VRQGERAVQLLERAMRLNPYFPDAYLWFLGDAYFHHGDYGKTIETLSRMRDQSEAHRLLAASHALLGQMDEARRHAGAVM
RVHPNFTIAHWRKVPPLKHAEDLELYVEGLRKAGLT
>Mature_595_residues
PERSLGRAMIAQPGLTGPRLQAVLYADIHGYTRLIEQDEAGTILRLTRSIALIRNLVGDYGGTVVNTAGDGLVAVFQDAP
KALHFAIEMQRELSRESAWAEAREPIAWRVGISLGETFEGQEGVYGHSVNLAARIQGFADPGGICVTETVYRIVRDNPEL
VLRSLGRRRLKNISAPVEIYAAAPASPAAAAAVPLRAVPRRVDPGLPDTSLAILPMENLSADPGDQHLCHGIVADLITNL
CRFRHLLVIARHSSFLAAAQTSSLREIGRRLGVRYLMTSSFRRAGNRLRITVELVEAESENTIWSERYDGVMLDIFDFQD
DVTAMTAARVAIQLDANERRRLAEQSHPALYAYGLVLRGQDMGLRFLPDANLHARRLFEEARDLDPDYGRSYAAMSRTFN
VEWRYNWTSNPDAALNQALVLAKRAVQCDALDSRGFSEMGLAHLYKKQHDEALAAYEHALALNPNDADLLAYTGDCLAYV
RQGERAVQLLERAMRLNPYFPDAYLWFLGDAYFHHGDYGKTIETLSRMRDQSEAHRLLAASHALLGQMDEARRHAGAVMR
VHPNFTIAHWRKVPPLKHAEDLELYVEGLRKAGLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00211 Guanylate_cyc; PF00515 TPR_1 [H]

EC number: =4.6.1.1 [H]

Molecular weight: Translated: 66390; Mature: 66259

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS50125 GUANYLATE_CYCLASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPERSLGRAMIAQPGLTGPRLQAVLYADIHGYTRLIEQDEAGTILRLTRSIALIRNLVGD
CCCHHHCCHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YGGTVVNTAGDGLVAVFQDAPKALHFAIEMQRELSRESAWAEAREPIAWRVGISLGETFE
CCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
GQEGVYGHSVNLAARIQGFADPGGICVTETVYRIVRDNPELVLRSLGRRRLKNISAPVEI
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEE
YAAAPASPAAAAAVPLRAVPRRVDPGLPDTSLAILPMENLSADPGDQHLCHGIVADLITN
EEECCCCCCHHHHCCHHHCCCCCCCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHH
LCRFRHLLVIARHSSFLAAAQTSSLREIGRRLGVRYLMTSSFRRAGNRLRITVELVEAES
HHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEEEEEECCC
ENTIWSERYDGVMLDIFDFQDDVTAMTAARVAIQLDANERRRLAEQSHPALYAYGLVLRG
CCCCHHHHCCCEEEEEECCCCHHHHHHHEEEEEEECCHHHHHHHHHCCCEEEEEEEEEEC
QDMGLRFLPDANLHARRLFEEARDLDPDYGRSYAAMSRTFNVEWRYNWTSNPDAALNQAL
CCCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEEEECCCCCCHHHHHHHH
VLAKRAVQCDALDSRGFSEMGLAHLYKKQHDEALAAYEHALALNPNDADLLAYTGDCLAY
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEECHHHHHH
VRQGERAVQLLERAMRLNPYFPDAYLWFLGDAYFHHGDYGKTIETLSRMRDQSEAHRLLA
HHCCHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ASHALLGQMDEARRHAGAVMRVHPNFTIAHWRKVPPLKHAEDLELYVEGLRKAGLT
HHHHHHHHHHHHHHHCCCEEEECCCEEEEHHCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PERSLGRAMIAQPGLTGPRLQAVLYADIHGYTRLIEQDEAGTILRLTRSIALIRNLVGD
CCHHHCCHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YGGTVVNTAGDGLVAVFQDAPKALHFAIEMQRELSRESAWAEAREPIAWRVGISLGETFE
CCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
GQEGVYGHSVNLAARIQGFADPGGICVTETVYRIVRDNPELVLRSLGRRRLKNISAPVEI
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEE
YAAAPASPAAAAAVPLRAVPRRVDPGLPDTSLAILPMENLSADPGDQHLCHGIVADLITN
EEECCCCCCHHHHCCHHHCCCCCCCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHH
LCRFRHLLVIARHSSFLAAAQTSSLREIGRRLGVRYLMTSSFRRAGNRLRITVELVEAES
HHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEEEEEEECCC
ENTIWSERYDGVMLDIFDFQDDVTAMTAARVAIQLDANERRRLAEQSHPALYAYGLVLRG
CCCCHHHHCCCEEEEEECCCCHHHHHHHEEEEEEECCHHHHHHHHHCCCEEEEEEEEEEC
QDMGLRFLPDANLHARRLFEEARDLDPDYGRSYAAMSRTFNVEWRYNWTSNPDAALNQAL
CCCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEEEECCCCCCHHHHHHHH
VLAKRAVQCDALDSRGFSEMGLAHLYKKQHDEALAAYEHALALNPNDADLLAYTGDCLAY
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEECHHHHHH
VRQGERAVQLLERAMRLNPYFPDAYLWFLGDAYFHHGDYGKTIETLSRMRDQSEAHRLLA
HHCCHHHHHHHHHHHHCCCCCCCHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ASHALLGQMDEARRHAGAVMRVHPNFTIAHWRKVPPLKHAEDLELYVEGLRKAGLT
HHHHHHHHHHHHHHHCCCEEEECCCEEEEHHCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10485295; 11481432 [H]