Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
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Accession | NC_008687 |
Length | 1,730,097 |
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The map label for this gene is 119386181
Identifier: 119386181
GI number: 119386181
Start: 613765
End: 614847
Strand: Direct
Name: 119386181
Synonym: Pden_3469
Alternate gene names: NA
Gene position: 613765-614847 (Clockwise)
Preceding gene: 119386178
Following gene: 119386185
Centisome position: 35.48
GC content: 70.08
Gene sequence:
>1083_bases ATGTCGATCAGACATTCCGCACCATCTTTTGCCAAGGAGCCGCTGCCCGCGATCCGCGGCGTGCTGCACCAGTTGACCAT GGCTGCGCTGCATGTGCAGCTTCGCGCCCGGTTCCAGGCGGATCGGCCGCAGGTCCTGGCCCGCCGGGCCGGGATCATGG CCCATGCGGCTGTCGACGGGCAGGCCAGCCTGCGTGCGATGTCGCATTACTGCCTTGAACAACTCATGCCCCGCGTGCGG TCGTTGATGATGCAGGTCGATGCCGCGGCCAGGCTTGCCGCCTTGCCGGCAGAGGTCGCGCCGGGCGCAGGACTCGCGGC ACAGTTGAGCGACATTGCCGCCAATCTGGAGCGTGCGCGCGAGACGTCGCGCGGCCGGGCCCGCACTCCGCATAAAAGCG CCGGCATGATCCGGCTGAGCGAGCAGCGGCTTTGGGCTGCGCTGGCAACCGAACTGCAACGGCTGGAAGAGACCGACGGC CCGATGAGCCACGCCAGCGCCCGGATCGAAGCGGCTGCCTTCGAGCTTGCCGCGGCGATCGAAGCGTTCCTGGAGCGTGA CGAGGGCATGGCGCTGGCGCAACGCCACGATCTGGCCCAGATCCTGATCCGGCTGGAAAGCCAGGCGGCCACGACCCCGC TGTCCCCCGGCGAGATCGCCGGGCAGCTTGGTCCCGCCGCCGCCCGCCTGCCCGATCTGGTGGACCTGTGCGTCGATCTG TCCCGGGCATACCAGCCGCTGCGCGAGGCCCGGCCGCAAATCGCCATGGTCCTGTCCATCGCGACCCAGACCGCCACCCA GTCCGGCGCGACCCGGCGGCTTGAGCAGGCCATGCAGGATCTGGACCATCTGCTGGGCGGGCTGGTTTCCGACTATCGCG CCCTGGCGCGATCCGCCAAGCGCCCGCAAGGCAAGGCGGCCATGCGGCGGTTGATCGCCGCCGAGGCGTCGTTGTGGCAT GAGGCGGCAAGGCTGCTGGCCGTTCCGCTGGCACTGGTCCCGGACGCCCCGGCAGCCCGTCCCGCGATACAGGCCGAAGC CCCTGCCGGCGACGAGCATCCGGCGATAGTGGCCTGCGCCTGA
Upstream 100 bases:
>100_bases ACTTGTATCATAAAGGCCGTCCTCTGTGCGCCCGCGCACAGAACTGCCGTGCCGGTTGCGGCATGTTTTGGAAAAATTTT GCAATCAGAGGGCGTGTTTC
Downstream 100 bases:
>100_bases CAGGCCCATCGTCTCTGCCGCCGAGAATTTCAGAGCATTTGATCATTACCTTGTTTTAAGTCTCTCTCTGAAAGAAAGGG TCAGGATCGTGACGATCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MSIRHSAPSFAKEPLPAIRGVLHQLTMAALHVQLRARFQADRPQVLARRAGIMAHAAVDGQASLRAMSHYCLEQLMPRVR SLMMQVDAAARLAALPAEVAPGAGLAAQLSDIAANLERARETSRGRARTPHKSAGMIRLSEQRLWAALATELQRLEETDG PMSHASARIEAAAFELAAAIEAFLERDEGMALAQRHDLAQILIRLESQAATTPLSPGEIAGQLGPAAARLPDLVDLCVDL SRAYQPLREARPQIAMVLSIATQTATQSGATRRLEQAMQDLDHLLGGLVSDYRALARSAKRPQGKAAMRRLIAAEASLWH EAARLLAVPLALVPDAPAARPAIQAEAPAGDEHPAIVACA
Sequences:
>Translated_360_residues MSIRHSAPSFAKEPLPAIRGVLHQLTMAALHVQLRARFQADRPQVLARRAGIMAHAAVDGQASLRAMSHYCLEQLMPRVR SLMMQVDAAARLAALPAEVAPGAGLAAQLSDIAANLERARETSRGRARTPHKSAGMIRLSEQRLWAALATELQRLEETDG PMSHASARIEAAAFELAAAIEAFLERDEGMALAQRHDLAQILIRLESQAATTPLSPGEIAGQLGPAAARLPDLVDLCVDL SRAYQPLREARPQIAMVLSIATQTATQSGATRRLEQAMQDLDHLLGGLVSDYRALARSAKRPQGKAAMRRLIAAEASLWH EAARLLAVPLALVPDAPAARPAIQAEAPAGDEHPAIVACA >Mature_359_residues SIRHSAPSFAKEPLPAIRGVLHQLTMAALHVQLRARFQADRPQVLARRAGIMAHAAVDGQASLRAMSHYCLEQLMPRVRS LMMQVDAAARLAALPAEVAPGAGLAAQLSDIAANLERARETSRGRARTPHKSAGMIRLSEQRLWAALATELQRLEETDGP MSHASARIEAAAFELAAAIEAFLERDEGMALAQRHDLAQILIRLESQAATTPLSPGEIAGQLGPAAARLPDLVDLCVDLS RAYQPLREARPQIAMVLSIATQTATQSGATRRLEQAMQDLDHLLGGLVSDYRALARSAKRPQGKAAMRRLIAAEASLWHE AARLLAVPLALVPDAPAARPAIQAEAPAGDEHPAIVACA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38494; Mature: 38363
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRHSAPSFAKEPLPAIRGVLHQLTMAALHVQLRARFQADRPQVLARRAGIMAHAAVDG CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC QASLRAMSHYCLEQLMPRVRSLMMQVDAAARLAALPAEVAPGAGLAAQLSDIAANLERAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHH ETSRGRARTPHKSAGMIRLSEQRLWAALATELQRLEETDGPMSHASARIEAAAFELAAAI HHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH EAFLERDEGMALAQRHDLAQILIRLESQAATTPLSPGEIAGQLGPAAARLPDLVDLCVDL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH SRAYQPLREARPQIAMVLSIATQTATQSGATRRLEQAMQDLDHLLGGLVSDYRALARSAK HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RPQGKAAMRRLIAAEASLWHEAARLLAVPLALVPDAPAARPAIQAEAPAGDEHPAIVACA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEC >Mature Secondary Structure SIRHSAPSFAKEPLPAIRGVLHQLTMAALHVQLRARFQADRPQVLARRAGIMAHAAVDG CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC QASLRAMSHYCLEQLMPRVRSLMMQVDAAARLAALPAEVAPGAGLAAQLSDIAANLERAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHH ETSRGRARTPHKSAGMIRLSEQRLWAALATELQRLEETDGPMSHASARIEAAAFELAAAI HHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH EAFLERDEGMALAQRHDLAQILIRLESQAATTPLSPGEIAGQLGPAAARLPDLVDLCVDL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH SRAYQPLREARPQIAMVLSIATQTATQSGATRRLEQAMQDLDHLLGGLVSDYRALARSAK HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RPQGKAAMRRLIAAEASLWHEAARLLAVPLALVPDAPAARPAIQAEAPAGDEHPAIVACA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA