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The map label for this gene is ypdF [C]

Identifier: 119386148

GI number: 119386148

Start: 578094

End: 579287

Strand: Direct

Name: ypdF [C]

Synonym: Pden_3436

Alternate gene names: 119386148

Gene position: 578094-579287 (Clockwise)

Preceding gene: 119386147

Following gene: 119386149

Centisome position: 33.41

GC content: 70.85

Gene sequence:

>1194_bases
ATGAAGATGATCGACGACCTTATCGCCGCGCCGCCGGCCGACCCCCTGCAAGGCGGCGATGCCGTTTTCCCCCAGGCGGA
ATTCACCGGCCGCCTCGCGCGCCTGCGGCTTGCCATCCAGCCGCTGGGCGCGGACGCCGTCATGCTGACCGGGCCCGAGA
ACATCTTCTGGGCCTGCGGTCGCCAGACGGCGGGGTATTTCGCCTTTCAGGCGCTGATCGTCCCGCTGGAGGGGGAGCCT
GTCCTGCTGGTGCGTCAGTTGGAGACGACCGGCGCCCGGGCCTCGACCTGGCTGCGCGACATCCGCGCCTGGCAGGACGG
CGAGGATCCGGCCCGGGCGTTGGCCGAACTGGTCGCGGATCTGGGGATCCGCCGCCTGGCGGTCGAGCGCGACGGCTGGT
TCGTCAGCCAGTCGCTGGGCGCCCGCATATCGGCCGCGCTGGAAGGCGTGGATCTGTGCGACGGCGCGTCGGTGGTCGAG
GGGCTGCGTGCCGTCAAGTCCCCGGCCGAGCTTGCGGCGATCCGGCTTGCGGCGGGCTATGCCCAGGCCGGTCTGGGCGC
GGCCATCGAGCGCTGCGCCGCCGGCGTCAGCGAGAACGACCTGGCCGCCGCCATGTTTTCGGCGGCGATCTCGGCCGGGT
CCGAGGCGATGGCGATGGAGCCCTTGATCTCGTCGGGGCCACGCTCGGGCGTGCCGCACGCGACCTGGCGCCGGCGTGTG
CTTCTGGAGGGCGATCCGGTTTTCCTTGAGCTTGCCGCCAGCCACGACCGCTATCACGCCGCCCTGATGCGCAGTGTGTG
GATCGGGTCGCCGCCGGCCGAGGCGCGGCGCATGATGGATGTGGCCCTGCGGGCGCTGGATGCGGCGCTGGCGTCGATGC
GGCCCGGCGTGCCTTGCAGCCTGCCCCATGATGCGGCGCAGGCCGTCATCGACGATGCGGGATATGCGGCGGCCTTTCGC
AAGCGCATCGGCTATTCGATGGGGGCGGCATTCGCGCCGGACTGGGGCGAAGGGGCGATCCTGTCGCTGTTTTCGGGCGT
GTCCCGCGAACTCGAGCCGGGCATGGTCTTTCACCTTCCGGCCACGCTGCGGGCCTATGGCGCCTTCACGGTCGGCGCTT
CCGAGACCGTGATCGTGACCCGATCCGGCATCGAGATCCTTTCCGACCTGCCGCGCACCCTTTGCATCCGTTGA

Upstream 100 bases:

>100_bases
ATTTCGCGCGGGGACGCCTCGGCTGCGCGCGACGCCATGTCGCTGCATTTCGAAAACGTCCGCAACCGCTTCCTTGGCTG
GTTCTCCAAAGGCTGAAAAG

Downstream 100 bases:

>100_bases
GATTTCTGACAGGAGCGACGCCCATGACCCATGTTCTTCCCTTGCCCGCCATCCCCTCGGTTCCCGTCGCCGGCAGCGAC
GACCGCTTTCCGGTGCGCCG

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MKMIDDLIAAPPADPLQGGDAVFPQAEFTGRLARLRLAIQPLGADAVMLTGPENIFWACGRQTAGYFAFQALIVPLEGEP
VLLVRQLETTGARASTWLRDIRAWQDGEDPARALAELVADLGIRRLAVERDGWFVSQSLGARISAALEGVDLCDGASVVE
GLRAVKSPAELAAIRLAAGYAQAGLGAAIERCAAGVSENDLAAAMFSAAISAGSEAMAMEPLISSGPRSGVPHATWRRRV
LLEGDPVFLELAASHDRYHAALMRSVWIGSPPAEARRMMDVALRALDAALASMRPGVPCSLPHDAAQAVIDDAGYAAAFR
KRIGYSMGAAFAPDWGEGAILSLFSGVSRELEPGMVFHLPATLRAYGAFTVGASETVIVTRSGIEILSDLPRTLCIR

Sequences:

>Translated_397_residues
MKMIDDLIAAPPADPLQGGDAVFPQAEFTGRLARLRLAIQPLGADAVMLTGPENIFWACGRQTAGYFAFQALIVPLEGEP
VLLVRQLETTGARASTWLRDIRAWQDGEDPARALAELVADLGIRRLAVERDGWFVSQSLGARISAALEGVDLCDGASVVE
GLRAVKSPAELAAIRLAAGYAQAGLGAAIERCAAGVSENDLAAAMFSAAISAGSEAMAMEPLISSGPRSGVPHATWRRRV
LLEGDPVFLELAASHDRYHAALMRSVWIGSPPAEARRMMDVALRALDAALASMRPGVPCSLPHDAAQAVIDDAGYAAAFR
KRIGYSMGAAFAPDWGEGAILSLFSGVSRELEPGMVFHLPATLRAYGAFTVGASETVIVTRSGIEILSDLPRTLCIR
>Mature_397_residues
MKMIDDLIAAPPADPLQGGDAVFPQAEFTGRLARLRLAIQPLGADAVMLTGPENIFWACGRQTAGYFAFQALIVPLEGEP
VLLVRQLETTGARASTWLRDIRAWQDGEDPARALAELVADLGIRRLAVERDGWFVSQSLGARISAALEGVDLCDGASVVE
GLRAVKSPAELAAIRLAAGYAQAGLGAAIERCAAGVSENDLAAAMFSAAISAGSEAMAMEPLISSGPRSGVPHATWRRRV
LLEGDPVFLELAASHDRYHAALMRSVWIGSPPAEARRMMDVALRALDAALASMRPGVPCSLPHDAAQAVIDDAGYAAAFR
KRIGYSMGAAFAPDWGEGAILSLFSGVSRELEPGMVFHLPATLRAYGAFTVGASETVIVTRSGIEILSDLPRTLCIR

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=241, Percent_Identity=29.4605809128631, Blast_Score=98, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 41943; Mature: 41943

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMIDDLIAAPPADPLQGGDAVFPQAEFTGRLARLRLAIQPLGADAVMLTGPENIFWACG
CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEEECCCCEEEECC
RQTAGYFAFQALIVPLEGEPVLLVRQLETTGARASTWLRDIRAWQDGEDPARALAELVAD
CCCCHHEEEEEEEEECCCCCEEEEEECHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LGIRRLAVERDGWFVSQSLGARISAALEGVDLCDGASVVEGLRAVKSPAELAAIRLAAGY
CCHHHEEEECCCCEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
AQAGLGAAIERCAAGVSENDLAAAMFSAAISAGSEAMAMEPLISSGPRSGVPHATWRRRV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHCEE
LLEGDPVFLELAASHDRYHAALMRSVWIGSPPAEARRMMDVALRALDAALASMRPGVPCS
EECCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LPHDAAQAVIDDAGYAAAFRKRIGYSMGAAFAPDWGEGAILSLFSGVSRELEPGMVFHLP
CCHHHHHHHHHCCHHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC
ATLRAYGAFTVGASETVIVTRSGIEILSDLPRTLCIR
HHHHHHEEEEECCCCEEEEEECCHHHHHHCHHHHCCC
>Mature Secondary Structure
MKMIDDLIAAPPADPLQGGDAVFPQAEFTGRLARLRLAIQPLGADAVMLTGPENIFWACG
CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEEECCCCEEEECC
RQTAGYFAFQALIVPLEGEPVLLVRQLETTGARASTWLRDIRAWQDGEDPARALAELVAD
CCCCHHEEEEEEEEECCCCCEEEEEECHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LGIRRLAVERDGWFVSQSLGARISAALEGVDLCDGASVVEGLRAVKSPAELAAIRLAAGY
CCHHHEEEECCCCEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
AQAGLGAAIERCAAGVSENDLAAAMFSAAISAGSEAMAMEPLISSGPRSGVPHATWRRRV
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHCEE
LLEGDPVFLELAASHDRYHAALMRSVWIGSPPAEARRMMDVALRALDAALASMRPGVPCS
EECCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LPHDAAQAVIDDAGYAAAFRKRIGYSMGAAFAPDWGEGAILSLFSGVSRELEPGMVFHLP
CCHHHHHHHHHCCHHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC
ATLRAYGAFTVGASETVIVTRSGIEILSDLPRTLCIR
HHHHHHEEEEECCCCEEEEEECCHHHHHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]