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The map label for this gene is ydfH [H]

Identifier: 119386147

GI number: 119386147

Start: 577454

End: 578089

Strand: Direct

Name: ydfH [H]

Synonym: Pden_3435

Alternate gene names: 119386147

Gene position: 577454-578089 (Clockwise)

Preceding gene: 119386146

Following gene: 119386148

Centisome position: 33.38

GC content: 67.61

Gene sequence:

>636_bases
ATGACGGCCGAGACCCTGTCGCAAACCGCCTATCGCCGCATCAAGCAGGATATCCTGGAAGGGCGCATCGCCCCGGATTC
GATGCTTTCCGAACGGGAACTGGCGTTGCGGCTGGGCATCTCGCGGACGCCTCTGCGCTCGGCCCTGTCGCGGCTCGAGA
ACGAGAACGTCATCGGCAGGCTTGCGAATGGCGCGCTGATCGTGCGCTCGGTGACGGTCGAGCAATTGCTGGAAATCGTG
CAATTGCGCCAGGTGCTGGAACGCGCCGCCGCCGCGCGCGCCGCCGAGCGCGGCATCACCGACGAGCTGCGGCAGGTCTG
GGACGAGATGCTGCCCTATGCCGAGGGCCGTTCGGTCGGCTTCGACGAGTTCTGGCAGGTCGACGAGCGCTTCCACGCGG
CCGTGGCCCGTGCTGCCGGACTGGAACTGCTGCCCGCCATCCTGGCCGAGCAGCGCGCCGTCGCCCGGCGCTGCACCATC
ACCCGCGTGCATGACCGTTTCGACGAGCAGGCGCGCGAGCATATCGCGGTGCTGGAGGCGATTTCGCGCGGGGACGCCTC
GGCTGCGCGCGACGCCATGTCGCTGCATTTCGAAAACGTCCGCAACCGCTTCCTTGGCTGGTTCTCCAAAGGCTGA

Upstream 100 bases:

>100_bases
GCAACTGGAACGGCAGCCACTGCCCCGAAGAGGCGATGGACGAGGCCGACCTCGCCCGGGCGGTCGAGGCCGTGTTCCTT
GCCCTTGCGGAGGACCGGAC

Downstream 100 bases:

>100_bases
AAAGATGAAGATGATCGACGACCTTATCGCCGCGCCGCCGGCCGACCCCCTGCAAGGCGGCGATGCCGTTTTCCCCCAGG
CGGAATTCACCGGCCGCCTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTAETLSQTAYRRIKQDILEGRIAPDSMLSERELALRLGISRTPLRSALSRLENENVIGRLANGALIVRSVTVEQLLEIV
QLRQVLERAAAARAAERGITDELRQVWDEMLPYAEGRSVGFDEFWQVDERFHAAVARAAGLELLPAILAEQRAVARRCTI
TRVHDRFDEQAREHIAVLEAISRGDASAARDAMSLHFENVRNRFLGWFSKG

Sequences:

>Translated_211_residues
MTAETLSQTAYRRIKQDILEGRIAPDSMLSERELALRLGISRTPLRSALSRLENENVIGRLANGALIVRSVTVEQLLEIV
QLRQVLERAAAARAAERGITDELRQVWDEMLPYAEGRSVGFDEFWQVDERFHAAVARAAGLELLPAILAEQRAVARRCTI
TRVHDRFDEQAREHIAVLEAISRGDASAARDAMSLHFENVRNRFLGWFSKG
>Mature_210_residues
TAETLSQTAYRRIKQDILEGRIAPDSMLSERELALRLGISRTPLRSALSRLENENVIGRLANGALIVRSVTVEQLLEIVQ
LRQVLERAAAARAAERGITDELRQVWDEMLPYAEGRSVGFDEFWQVDERFHAAVARAAGLELLPAILAEQRAVARRCTIT
RVHDRFDEQAREHIAVLEAISRGDASAARDAMSLHFENVRNRFLGWFSKG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=234, Percent_Identity=25.6410256410256, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23789; Mature: 23658

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAETLSQTAYRRIKQDILEGRIAPDSMLSERELALRLGISRTPLRSALSRLENENVIGR
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHH
LANGALIVRSVTVEQLLEIVQLRQVLERAAAARAAERGITDELRQVWDEMLPYAEGRSVG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
FDEFWQVDERFHAAVARAAGLELLPAILAEQRAVARRCTITRVHDRFDEQAREHIAVLEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISRGDASAARDAMSLHFENVRNRFLGWFSKG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAETLSQTAYRRIKQDILEGRIAPDSMLSERELALRLGISRTPLRSALSRLENENVIGR
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHH
LANGALIVRSVTVEQLLEIVQLRQVLERAAAARAAERGITDELRQVWDEMLPYAEGRSVG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
FDEFWQVDERFHAAVARAAGLELLPAILAEQRAVARRCTITRVHDRFDEQAREHIAVLEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISRGDASAARDAMSLHFENVRNRFLGWFSKG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]