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The map label for this gene is ydfH [H]

Identifier: 119386144

GI number: 119386144

Start: 574592

End: 575242

Strand: Direct

Name: ydfH [H]

Synonym: Pden_3432

Alternate gene names: 119386144

Gene position: 574592-575242 (Clockwise)

Preceding gene: 119386143

Following gene: 119386145

Centisome position: 33.21

GC content: 65.59

Gene sequence:

>651_bases
ATGAGCATATCGTCGAACCTGTCGCAGGAAGCGCATCGCCGGATCATCGGCATGATCTTCGAGGGTGCGCTCAAGTCGGG
TGATGCCCTGCAAGAGGCACCGCTGGGCGAGCGGCTGGGCATGTCGCGCACCCCCGTGCGCGAGGCGATCAAGCGTATCG
AAAGCGAAGGGCTGGCCGAGACCTCGGGCCGTTTCACGCGTGTCCGGCACATGCGGCGCAGCGAGTTCGAGGAGATCTTT
TTCCTGCGTTTGCAGCTTGAGCCCTTTGCCGCGCGGGCGGCGGTGCGCCTGCCGCCGGCACAGGTGGATGCGATGGAGGA
GCGTATCCGGCGCCTGATGGCGGCAGGCCCGGAGCTGGATGGTAGTCATTTCCAGACCGACAACGACTTCCACGACATGA
TGCTGCAACCGCTGGGCAACCGGACGATCAGCGCCGTCGTCGCCTCGCTGAGGCGGCGCACCTGCGTCTTCGACCATACC
CAGGTGCCCGACCGTTTCCTGCAGGGCTGCGACGAGCATCTGGATATCCTGAACGCGGTGCGCTCGGGCAATGCCGATGC
CGTGGCCACCGGGATGGTGCGGCATCTGGAAAACGCACGGGATGCCGTCCTGGACCGCCTGGACCGGATTTCGGCAGAGA
CCGCGCCATGA

Upstream 100 bases:

>100_bases
TGCGCTCGGACTATCTGCTTTCCTGCGATCTTGTGGGCGGTATCGTCTTCCCCGAGGAAGTCGTCTGGGCGGAAGCGGTC
ATGAGAAAGGGGCGCAAGGC

Downstream 100 bases:

>100_bases
AATGCCTGATCGTCCAACCCATCCACGAATCGGGCCTGGCCCTGCTGCGCGAGAACGGCATCGAGCCGGTGCCCTGTCCC
GCGCCGGACATGGCGACGGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSISSNLSQEAHRRIIGMIFEGALKSGDALQEAPLGERLGMSRTPVREAIKRIESEGLAETSGRFTRVRHMRRSEFEEIF
FLRLQLEPFAARAAVRLPPAQVDAMEERIRRLMAAGPELDGSHFQTDNDFHDMMLQPLGNRTISAVVASLRRRTCVFDHT
QVPDRFLQGCDEHLDILNAVRSGNADAVATGMVRHLENARDAVLDRLDRISAETAP

Sequences:

>Translated_216_residues
MSISSNLSQEAHRRIIGMIFEGALKSGDALQEAPLGERLGMSRTPVREAIKRIESEGLAETSGRFTRVRHMRRSEFEEIF
FLRLQLEPFAARAAVRLPPAQVDAMEERIRRLMAAGPELDGSHFQTDNDFHDMMLQPLGNRTISAVVASLRRRTCVFDHT
QVPDRFLQGCDEHLDILNAVRSGNADAVATGMVRHLENARDAVLDRLDRISAETAP
>Mature_215_residues
SISSNLSQEAHRRIIGMIFEGALKSGDALQEAPLGERLGMSRTPVREAIKRIESEGLAETSGRFTRVRHMRRSEFEEIFF
LRLQLEPFAARAAVRLPPAQVDAMEERIRRLMAAGPELDGSHFQTDNDFHDMMLQPLGNRTISAVVASLRRRTCVFDHTQ
VPDRFLQGCDEHLDILNAVRSGNADAVATGMVRHLENARDAVLDRLDRISAETAP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24217; Mature: 24086

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISSNLSQEAHRRIIGMIFEGALKSGDALQEAPLGERLGMSRTPVREAIKRIESEGLAE
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCHH
TSGRFTRVRHMRRSEFEEIFFLRLQLEPFAARAAVRLPPAQVDAMEERIRRLMAAGPELD
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
GSHFQTDNDFHDMMLQPLGNRTISAVVASLRRRTCVFDHTQVPDRFLQGCDEHLDILNAV
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RSGNADAVATGMVRHLENARDAVLDRLDRISAETAP
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SISSNLSQEAHRRIIGMIFEGALKSGDALQEAPLGERLGMSRTPVREAIKRIESEGLAE
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCHH
TSGRFTRVRHMRRSEFEEIFFLRLQLEPFAARAAVRLPPAQVDAMEERIRRLMAAGPELD
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
GSHFQTDNDFHDMMLQPLGNRTISAVVASLRRRTCVFDHTQVPDRFLQGCDEHLDILNAV
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RSGNADAVATGMVRHLENARDAVLDRLDRISAETAP
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]