Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is serA [H]

Identifier: 119386145

GI number: 119386145

Start: 575239

End: 576189

Strand: Direct

Name: serA [H]

Synonym: Pden_3433

Alternate gene names: 119386145

Gene position: 575239-576189 (Clockwise)

Preceding gene: 119386144

Following gene: 119386146

Centisome position: 33.25

GC content: 73.29

Gene sequence:

>951_bases
ATGAAATGCCTGATCGTCCAACCCATCCACGAATCGGGCCTGGCCCTGCTGCGCGAGAACGGCATCGAGCCGGTGCCCTG
TCCCGCGCCGGACATGGCGACGGTGGCGCACCACATCGCCGGCTGCCAGGCCGTCATCACCCGCGACGCCGGCCTGTCCG
CCCCGGCCTTTGCCGCGGCCGGCGAGCTGCGCGTGGTGGTCGTCCACGGCACCGGCCATGATCCGGTGGACAAGGGCGCC
GCCACGGCGCGCGGGGTCGTGATCGCCAATACGCCGGGCGCCAACGCGCAATCGGTGGCCGAGCTGGCGCTGGGCCTGGC
GCTGGCCGTGGCGCGGCGCATCCCGGCGGCGGATCGCGCGCAGCGGGCGGGCGTCGCCGGATTTCGCGAATCCGCCCGCT
TCGCCGAGCTGTCGGGCAAGACCGCGCTGATCGTCGGCTGGGGTGCCATCGGGCGCAGCTTCGGCCGCATGCTGGACCGG
GCGCTGGGTATGACGGTGCTGGTCCATTCGCCGCGCGCCTCGGATACGGCGCCCTATCGCCGCGCCGCCGATCTTGCCGA
GGGGCTGGCGCAGGCCGATCTGGTCTCGCTGCACACGCCGCTGCGGGCCGAGACGCGGGGCATGATGGGCCTCGCGCAGT
TCCGGGCCATGAAGCCGGGGGCGATCCTGCTGAACCTCGCCCGTGCGGGGCTGGTCGACGAGCCGGCGCTTTGCGAGGCG
CTGGCCTCGGGGCGGCTGGCGGGGGCCGGGCTCGACGTCTGGTCCGGTGATGCGCCGCAGGGGCCGCTGGCGGCCTTCCC
CAATGTCGTCTTTACCCCGCATCTGGGCGGCACGACCGAGGACGCGCTGAAGCGCGTGGCCGAGGCCGCCGCCCGCCATG
TCATTTCCGCGCTTTCCGGCAGGCTGCCCGAAACCGCGATCAATCCCGAAGTCTGGAGCCAGACCGCATGA

Upstream 100 bases:

>100_bases
GCAATGCCGATGCCGTGGCCACCGGGATGGTGCGGCATCTGGAAAACGCACGGGATGCCGTCCTGGACCGCCTGGACCGG
ATTTCGGCAGAGACCGCGCC

Downstream 100 bases:

>100_bases
CCATCCTTGCCGCGCGCCGCCAGAACACCGTCATCGGCGACACGATCGCCCGCGTCCTGTCGCGCGTGAACGCGATCACG
CAGGGCGGGCCGGGCCATAC

Product: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding

Products: NA

Alternate protein names: PGDH [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAAGELRVVVVHGTGHDPVDKGA
ATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRAQRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDR
ALGMTVLVHSPRASDTAPYRRAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA
LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSGRLPETAINPEVWSQTA

Sequences:

>Translated_316_residues
MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAAGELRVVVVHGTGHDPVDKGA
ATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRAQRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDR
ALGMTVLVHSPRASDTAPYRRAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA
LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSGRLPETAINPEVWSQTA
>Mature_316_residues
MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAAGELRVVVVHGTGHDPVDKGA
ATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRAQRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDR
ALGMTVLVHSPRASDTAPYRRAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA
LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSGRLPETAINPEVWSQTA

Specific function: Serine biosynthesis; first step. [C]

COG id: COG0111

COG function: function code HE; Phosphoglycerate dehydrogenase and related dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

Organism=Homo sapiens, GI23308577, Length=316, Percent_Identity=32.9113924050633, Blast_Score=148, Evalue=6e-36,
Organism=Homo sapiens, GI145580578, Length=270, Percent_Identity=34.4444444444444, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI4557499, Length=270, Percent_Identity=34.4444444444444, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI61743967, Length=259, Percent_Identity=34.3629343629344, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI4557497, Length=259, Percent_Identity=34.3629343629344, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI145580575, Length=270, Percent_Identity=34.4444444444444, Blast_Score=128, Evalue=7e-30,
Organism=Homo sapiens, GI6912396, Length=251, Percent_Identity=29.0836653386454, Blast_Score=99, Evalue=6e-21,
Organism=Escherichia coli, GI1789279, Length=324, Percent_Identity=33.9506172839506, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI87082289, Length=280, Percent_Identity=31.0714285714286, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787645, Length=281, Percent_Identity=29.1814946619217, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788660, Length=269, Percent_Identity=29.368029739777, Blast_Score=68, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17532191, Length=307, Percent_Identity=32.5732899022801, Blast_Score=138, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI25147481, Length=265, Percent_Identity=31.6981132075472, Blast_Score=113, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6320925, Length=342, Percent_Identity=30.1169590643275, Blast_Score=143, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6322116, Length=342, Percent_Identity=28.9473684210526, Blast_Score=133, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6324964, Length=327, Percent_Identity=28.1345565749235, Blast_Score=96, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6324055, Length=262, Percent_Identity=27.8625954198473, Blast_Score=86, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6325144, Length=284, Percent_Identity=23.2394366197183, Blast_Score=70, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6324980, Length=130, Percent_Identity=33.0769230769231, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6321253, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=9e-13,
Organism=Drosophila melanogaster, GI19921140, Length=313, Percent_Identity=34.185303514377, Blast_Score=138, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24646446, Length=269, Percent_Identity=31.5985130111524, Blast_Score=118, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24646448, Length=269, Percent_Identity=31.5985130111524, Blast_Score=118, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24646452, Length=269, Percent_Identity=31.5985130111524, Blast_Score=118, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24646450, Length=269, Percent_Identity=31.5985130111524, Blast_Score=118, Evalue=6e-27,
Organism=Drosophila melanogaster, GI62472511, Length=269, Percent_Identity=31.5985130111524, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45552429, Length=321, Percent_Identity=29.2834890965732, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24585514, Length=322, Percent_Identity=29.1925465838509, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI28574282, Length=322, Percent_Identity=29.1925465838509, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI45551003, Length=321, Percent_Identity=29.2834890965732, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI28574284, Length=321, Percent_Identity=29.2834890965732, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24585516, Length=313, Percent_Identity=27.7955271565495, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI28574286, Length=303, Percent_Identity=28.7128712871287, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI28571528, Length=316, Percent_Identity=30.6962025316456, Blast_Score=101, Evalue=5e-22,

Paralogues:

None

Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR006236
- InterPro:   IPR006139
- InterPro:   IPR006140
- InterPro:   IPR015508
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00389 2-Hacid_dh; PF02826 2-Hacid_dh_C; PF01842 ACT [H]

EC number: =1.1.1.95 [H]

Molecular weight: Translated: 32462; Mature: 32462

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAA
CCEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCCCCCCHHHCC
GELRVVVVHGTGHDPVDKGAATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRA
CCEEEEEEECCCCCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
QRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDRALGMTVLVHSPRASDTAPYR
HHCCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHH
RAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHH
LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSG
HHCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
RLPETAINPEVWSQTA
CCCCCCCCHHHHCCCC
>Mature Secondary Structure
MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAA
CCEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCCCCCCHHHCC
GELRVVVVHGTGHDPVDKGAATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRA
CCEEEEEEECCCCCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
QRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDRALGMTVLVHSPRASDTAPYR
HHCCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHH
RAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHH
LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSG
HHCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
RLPETAINPEVWSQTA
CCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]