Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
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Accession | NC_008687 |
Length | 1,730,097 |
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The map label for this gene is serA [H]
Identifier: 119386145
GI number: 119386145
Start: 575239
End: 576189
Strand: Direct
Name: serA [H]
Synonym: Pden_3433
Alternate gene names: 119386145
Gene position: 575239-576189 (Clockwise)
Preceding gene: 119386144
Following gene: 119386146
Centisome position: 33.25
GC content: 73.29
Gene sequence:
>951_bases ATGAAATGCCTGATCGTCCAACCCATCCACGAATCGGGCCTGGCCCTGCTGCGCGAGAACGGCATCGAGCCGGTGCCCTG TCCCGCGCCGGACATGGCGACGGTGGCGCACCACATCGCCGGCTGCCAGGCCGTCATCACCCGCGACGCCGGCCTGTCCG CCCCGGCCTTTGCCGCGGCCGGCGAGCTGCGCGTGGTGGTCGTCCACGGCACCGGCCATGATCCGGTGGACAAGGGCGCC GCCACGGCGCGCGGGGTCGTGATCGCCAATACGCCGGGCGCCAACGCGCAATCGGTGGCCGAGCTGGCGCTGGGCCTGGC GCTGGCCGTGGCGCGGCGCATCCCGGCGGCGGATCGCGCGCAGCGGGCGGGCGTCGCCGGATTTCGCGAATCCGCCCGCT TCGCCGAGCTGTCGGGCAAGACCGCGCTGATCGTCGGCTGGGGTGCCATCGGGCGCAGCTTCGGCCGCATGCTGGACCGG GCGCTGGGTATGACGGTGCTGGTCCATTCGCCGCGCGCCTCGGATACGGCGCCCTATCGCCGCGCCGCCGATCTTGCCGA GGGGCTGGCGCAGGCCGATCTGGTCTCGCTGCACACGCCGCTGCGGGCCGAGACGCGGGGCATGATGGGCCTCGCGCAGT TCCGGGCCATGAAGCCGGGGGCGATCCTGCTGAACCTCGCCCGTGCGGGGCTGGTCGACGAGCCGGCGCTTTGCGAGGCG CTGGCCTCGGGGCGGCTGGCGGGGGCCGGGCTCGACGTCTGGTCCGGTGATGCGCCGCAGGGGCCGCTGGCGGCCTTCCC CAATGTCGTCTTTACCCCGCATCTGGGCGGCACGACCGAGGACGCGCTGAAGCGCGTGGCCGAGGCCGCCGCCCGCCATG TCATTTCCGCGCTTTCCGGCAGGCTGCCCGAAACCGCGATCAATCCCGAAGTCTGGAGCCAGACCGCATGA
Upstream 100 bases:
>100_bases GCAATGCCGATGCCGTGGCCACCGGGATGGTGCGGCATCTGGAAAACGCACGGGATGCCGTCCTGGACCGCCTGGACCGG ATTTCGGCAGAGACCGCGCC
Downstream 100 bases:
>100_bases CCATCCTTGCCGCGCGCCGCCAGAACACCGTCATCGGCGACACGATCGCCCGCGTCCTGTCGCGCGTGAACGCGATCACG CAGGGCGGGCCGGGCCATAC
Product: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
Products: NA
Alternate protein names: PGDH [H]
Number of amino acids: Translated: 316; Mature: 316
Protein sequence:
>316_residues MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAAGELRVVVVHGTGHDPVDKGA ATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRAQRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDR ALGMTVLVHSPRASDTAPYRRAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSGRLPETAINPEVWSQTA
Sequences:
>Translated_316_residues MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAAGELRVVVVHGTGHDPVDKGA ATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRAQRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDR ALGMTVLVHSPRASDTAPYRRAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSGRLPETAINPEVWSQTA >Mature_316_residues MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAAGELRVVVVHGTGHDPVDKGA ATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRAQRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDR ALGMTVLVHSPRASDTAPYRRAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSGRLPETAINPEVWSQTA
Specific function: Serine biosynthesis; first step. [C]
COG id: COG0111
COG function: function code HE; Phosphoglycerate dehydrogenase and related dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI23308577, Length=316, Percent_Identity=32.9113924050633, Blast_Score=148, Evalue=6e-36, Organism=Homo sapiens, GI145580578, Length=270, Percent_Identity=34.4444444444444, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI4557499, Length=270, Percent_Identity=34.4444444444444, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI61743967, Length=259, Percent_Identity=34.3629343629344, Blast_Score=132, Evalue=4e-31, Organism=Homo sapiens, GI4557497, Length=259, Percent_Identity=34.3629343629344, Blast_Score=132, Evalue=5e-31, Organism=Homo sapiens, GI145580575, Length=270, Percent_Identity=34.4444444444444, Blast_Score=128, Evalue=7e-30, Organism=Homo sapiens, GI6912396, Length=251, Percent_Identity=29.0836653386454, Blast_Score=99, Evalue=6e-21, Organism=Escherichia coli, GI1789279, Length=324, Percent_Identity=33.9506172839506, Blast_Score=148, Evalue=4e-37, Organism=Escherichia coli, GI87082289, Length=280, Percent_Identity=31.0714285714286, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1787645, Length=281, Percent_Identity=29.1814946619217, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788660, Length=269, Percent_Identity=29.368029739777, Blast_Score=68, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17532191, Length=307, Percent_Identity=32.5732899022801, Blast_Score=138, Evalue=5e-33, Organism=Caenorhabditis elegans, GI25147481, Length=265, Percent_Identity=31.6981132075472, Blast_Score=113, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6320925, Length=342, Percent_Identity=30.1169590643275, Blast_Score=143, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6322116, Length=342, Percent_Identity=28.9473684210526, Blast_Score=133, Evalue=4e-32, Organism=Saccharomyces cerevisiae, GI6324964, Length=327, Percent_Identity=28.1345565749235, Blast_Score=96, Evalue=6e-21, Organism=Saccharomyces cerevisiae, GI6324055, Length=262, Percent_Identity=27.8625954198473, Blast_Score=86, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6325144, Length=284, Percent_Identity=23.2394366197183, Blast_Score=70, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6324980, Length=130, Percent_Identity=33.0769230769231, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6321253, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI19921140, Length=313, Percent_Identity=34.185303514377, Blast_Score=138, Evalue=5e-33, Organism=Drosophila melanogaster, GI24646446, Length=269, Percent_Identity=31.5985130111524, Blast_Score=118, Evalue=6e-27, Organism=Drosophila melanogaster, GI24646448, Length=269, Percent_Identity=31.5985130111524, Blast_Score=118, Evalue=6e-27, Organism=Drosophila melanogaster, GI24646452, Length=269, Percent_Identity=31.5985130111524, Blast_Score=118, Evalue=6e-27, Organism=Drosophila melanogaster, GI24646450, Length=269, Percent_Identity=31.5985130111524, Blast_Score=118, Evalue=6e-27, Organism=Drosophila melanogaster, GI62472511, Length=269, Percent_Identity=31.5985130111524, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI45552429, Length=321, Percent_Identity=29.2834890965732, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24585514, Length=322, Percent_Identity=29.1925465838509, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI28574282, Length=322, Percent_Identity=29.1925465838509, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI45551003, Length=321, Percent_Identity=29.2834890965732, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI28574284, Length=321, Percent_Identity=29.2834890965732, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI24585516, Length=313, Percent_Identity=27.7955271565495, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI28574286, Length=303, Percent_Identity=28.7128712871287, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI28571528, Length=316, Percent_Identity=30.6962025316456, Blast_Score=101, Evalue=5e-22,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR006236 - InterPro: IPR006139 - InterPro: IPR006140 - InterPro: IPR015508 - InterPro: IPR016040 [H]
Pfam domain/function: PF00389 2-Hacid_dh; PF02826 2-Hacid_dh_C; PF01842 ACT [H]
EC number: =1.1.1.95 [H]
Molecular weight: Translated: 32462; Mature: 32462
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAA CCEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCCCCCCHHHCC GELRVVVVHGTGHDPVDKGAATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRA CCEEEEEEECCCCCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH QRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDRALGMTVLVHSPRASDTAPYR HHCCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHH RAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHH LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSG HHCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC RLPETAINPEVWSQTA CCCCCCCCHHHHCCCC >Mature Secondary Structure MKCLIVQPIHESGLALLRENGIEPVPCPAPDMATVAHHIAGCQAVITRDAGLSAPAFAAA CCEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCCCCCCHHHCC GELRVVVVHGTGHDPVDKGAATARGVVIANTPGANAQSVAELALGLALAVARRIPAADRA CCEEEEEEECCCCCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH QRAGVAGFRESARFAELSGKTALIVGWGAIGRSFGRMLDRALGMTVLVHSPRASDTAPYR HHCCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHH RAADLAEGLAQADLVSLHTPLRAETRGMMGLAQFRAMKPGAILLNLARAGLVDEPALCEA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHH LASGRLAGAGLDVWSGDAPQGPLAAFPNVVFTPHLGGTTEDALKRVAEAAARHVISALSG HHCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC RLPETAINPEVWSQTA CCCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]