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The map label for this gene is ybgK [H]

Identifier: 119386143

GI number: 119386143

Start: 573531

End: 574595

Strand: Direct

Name: ybgK [H]

Synonym: Pden_3431

Alternate gene names: 119386143

Gene position: 573531-574595 (Clockwise)

Preceding gene: 119386142

Following gene: 119386144

Centisome position: 33.15

GC content: 70.42

Gene sequence:

>1065_bases
ATGAGCGTCGAGATCGTTTCCGCCGGGCCGATGCTGACCGTCCAGGACGCGGGCAGGATCGGGCTGCGGCATATGGGCGT
CTCGGATGCCGGTCCGGTCGATGCCGCCGCCATGGCACTGGCCAACGCGCTTTGCGGCAATGCGTCGGGCATGGCGGCGC
TGGAATTCGCCGGTCCGGCCGGCAGCTTCACCACCTCGCGCCCGGTGCGCTTTGCCGTCGCGGGCGGGGATTGCGACATC
CGCATTGACGACCGCATCGTGCAGGCCGGCGAAAGCCACCGCCTGAAGCCGGGCGAGTTGCTGCGGATCGGGCTGGCCCG
AGAGGTGGTCTGGGCCTATCTGGCCTTTTCCGGCGGCATCGCGACGGCGCCGGTCCTGGGGTCGCGGGCCACGCATCTGC
GCAGCGGGTTGGGCGGGGTCGATGGGCGCTGCCTGCGCGGGGGCGATATCCTGCCGCTGGGCGCGGACCAGCCGGATGTC
CCCTGCCTGCGCCCGGCTTCGCCGCTGCAAGGGGCCAGCCTGCCGCGCGGACAGGGGCCGATCCGCGTCGTGCTGGGACC
GCAGCAGGATTATTTCGATGCCGGGACATTGGCCAGGCTGACGGGCGAGGAGTTCCTGGTCACGCCGCAACGTGACCGCA
TGGCCATGGTGCTGGGCGATGCCTGCCTGCCTGCCGCGCGCGGGCATGACATCGTCTCGGACGGGACCGTGCCCGGCTCG
ATCCAGGTGCCGGGATCGGGCCAGCCGCTGGTTTTGCTGGTGGAAAGCCAGACCACCGGCGGCTATCCCAAGATCGCCAC
GGTGATCTCGGCCGACCTGCCGCGCCTGGCGCAGCTTCCGGTCGGAAGCCGCATCCGCTTCGCCGCGGTCTCTCGCGACG
AGGGTGAGCGGATCGGCATCGCCCGCGCGCGCGCGCTGCGGGATGCCCTTGCCGCACTGGTCGCCAAGCCCGAGGGCATC
CTGCGCTCGGACTATCTGCTTTCCTGCGATCTTGTGGGCGGTATCGTCTTCCCCGAGGAAGTCGTCTGGGCGGAAGCGGT
CATGAGAAAGGGGCGCAAGGCATGA

Upstream 100 bases:

>100_bases
GCGACCGCATCCGGTTTCGTCCCATCGATGCTGCCGAGGCCCAGGTCCTGGCCGGCCGCGTCGCGGCAGGAGAGGCGATT
CTCCAACCCGAGGCCATGGC

Downstream 100 bases:

>100_bases
GCATATCGTCGAACCTGTCGCAGGAAGCGCATCGCCGGATCATCGGCATGATCTTCGAGGGTGCGCTCAAGTCGGGTGAT
GCCCTGCAAGAGGCACCGCT

Product: urea amidolyase related protein

Products: ADP; phosphate; urea-1-carboxylate

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MSVEIVSAGPMLTVQDAGRIGLRHMGVSDAGPVDAAAMALANALCGNASGMAALEFAGPAGSFTTSRPVRFAVAGGDCDI
RIDDRIVQAGESHRLKPGELLRIGLAREVVWAYLAFSGGIATAPVLGSRATHLRSGLGGVDGRCLRGGDILPLGADQPDV
PCLRPASPLQGASLPRGQGPIRVVLGPQQDYFDAGTLARLTGEEFLVTPQRDRMAMVLGDACLPAARGHDIVSDGTVPGS
IQVPGSGQPLVLLVESQTTGGYPKIATVISADLPRLAQLPVGSRIRFAAVSRDEGERIGIARARALRDALAALVAKPEGI
LRSDYLLSCDLVGGIVFPEEVVWAEAVMRKGRKA

Sequences:

>Translated_354_residues
MSVEIVSAGPMLTVQDAGRIGLRHMGVSDAGPVDAAAMALANALCGNASGMAALEFAGPAGSFTTSRPVRFAVAGGDCDI
RIDDRIVQAGESHRLKPGELLRIGLAREVVWAYLAFSGGIATAPVLGSRATHLRSGLGGVDGRCLRGGDILPLGADQPDV
PCLRPASPLQGASLPRGQGPIRVVLGPQQDYFDAGTLARLTGEEFLVTPQRDRMAMVLGDACLPAARGHDIVSDGTVPGS
IQVPGSGQPLVLLVESQTTGGYPKIATVISADLPRLAQLPVGSRIRFAAVSRDEGERIGIARARALRDALAALVAKPEGI
LRSDYLLSCDLVGGIVFPEEVVWAEAVMRKGRKA
>Mature_353_residues
SVEIVSAGPMLTVQDAGRIGLRHMGVSDAGPVDAAAMALANALCGNASGMAALEFAGPAGSFTTSRPVRFAVAGGDCDIR
IDDRIVQAGESHRLKPGELLRIGLAREVVWAYLAFSGGIATAPVLGSRATHLRSGLGGVDGRCLRGGDILPLGADQPDVP
CLRPASPLQGASLPRGQGPIRVVLGPQQDYFDAGTLARLTGEEFLVTPQRDRMAMVLGDACLPAARGHDIVSDGTVPGSI
QVPGSGQPLVLLVESQTTGGYPKIATVISADLPRLAQLPVGSRIRFAAVSRDEGERIGIARARALRDALAALVAKPEGIL
RSDYLLSCDLVGGIVFPEEVVWAEAVMRKGRKA

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=292, Percent_Identity=36.3013698630137, Blast_Score=181, Evalue=9e-47,
Organism=Saccharomyces cerevisiae, GI6319685, Length=328, Percent_Identity=26.8292682926829, Blast_Score=94, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: 6.3.4.6

Molecular weight: Translated: 36717; Mature: 36586

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEIVSAGPMLTVQDAGRIGLRHMGVSDAGPVDAAAMALANALCGNASGMAALEFAGPA
CEEEEEECCCEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
GSFTTSRPVRFAVAGGDCDIRIDDRIVQAGESHRLKPGELLRIGLAREVVWAYLAFSGGI
CCCCCCCCEEEEEECCCEEEEECHHHHHCCCCCCCCCCHHEEHHHHHHHHHHHHHHCCCC
ATAPVLGSRATHLRSGLGGVDGRCLRGGDILPLGADQPDVPCLRPASPLQGASLPRGQGP
CCCCCCCCHHHHHHHCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
IRVVLGPQQDYFDAGTLARLTGEEFLVTPQRDRMAMVLGDACLPAARGHDIVSDGTVPGS
EEEEECCCCCCCCCCCEEEECCCEEEECCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCE
IQVPGSGQPLVLLVESQTTGGYPKIATVISADLPRLAQLPVGSRIRFAAVSRDEGERIGI
EEECCCCCCEEEEEECCCCCCCCHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCCEEHH
ARARALRDALAALVAKPEGILRSDYLLSCDLVGGIVFPEEVVWAEAVMRKGRKA
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVEIVSAGPMLTVQDAGRIGLRHMGVSDAGPVDAAAMALANALCGNASGMAALEFAGPA
EEEEEECCCEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
GSFTTSRPVRFAVAGGDCDIRIDDRIVQAGESHRLKPGELLRIGLAREVVWAYLAFSGGI
CCCCCCCCEEEEEECCCEEEEECHHHHHCCCCCCCCCCHHEEHHHHHHHHHHHHHHCCCC
ATAPVLGSRATHLRSGLGGVDGRCLRGGDILPLGADQPDVPCLRPASPLQGASLPRGQGP
CCCCCCCCHHHHHHHCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
IRVVLGPQQDYFDAGTLARLTGEEFLVTPQRDRMAMVLGDACLPAARGHDIVSDGTVPGS
EEEEECCCCCCCCCCCEEEECCCEEEECCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCE
IQVPGSGQPLVLLVESQTTGGYPKIATVISADLPRLAQLPVGSRIRFAAVSRDEGERIGI
EEECCCCCCEEEEEECCCCCCCCHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCCEEHH
ARARALRDALAALVAKPEGILRSDYLLSCDLVGGIVFPEEVVWAEAVMRKGRKA
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; urea; CO2

Specific reaction: ATP + urea + CO2 = ADP + phosphate + urea-1-carboxylate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]