Click here to switch to the map view.

The map label for this gene is oprF [H]

Identifier: 119357472

GI number: 119357472

Start: 1899662

End: 1900351

Strand: Direct

Name: oprF [H]

Synonym: Cpha266_1671

Alternate gene names: 119357472

Gene position: 1899662-1900351 (Clockwise)

Preceding gene: 119357470

Following gene: 119357473

Centisome position: 60.62

GC content: 49.71

Gene sequence:

>690_bases
ATGGCCTACGTACAAAAACTCACAAAACCGGTAGCCTTTCTGCTCATCCTTGTCATGACCACGTTCACCTGGGGTTGTTC
AACGACAACGAATGCAGGCAGAGGAGCAGGAATCGGAGCCGGATCCGGCGCACTCATTGGCGGAATTATCGGCAGCGTAT
CAGGAAGCTGGGTTAAAGGCGCTCTTATCGGCGCAGCGATCGGTGGTGGTGCCGGAGCGCTGATTGGAAACTATATGGAT
AAACAGGCTGCCGAAATCGACCGAAACGTCGAAGGCGCAGAGGTTGAAAGGATCGGTGAAGGAATACGGGTTGTCTTTGA
TTCAGGCATTCTATTCAATACAGGTTCTTCGGCCATTACATCGACAAGCCGTTACAACATTGAAAAACTTGCAGGAATCC
TGGCAAAATATGACGATACCAACCTTATTATCGAAGGCCATACCGACAGCGTAGGCAGCGACTCAATGAACCAGACTCTT
TCCGAAAATCGGGCACAGTCAGTTGCAAATCTTCTCAAAGCTTATGGCGTCAGCAGCAGCAGGCTTTCAGCAATTGGATA
CGGTGAATCCCGTCCGATAGCATCCAATGAAACAGAGTCTGGTCGCCGTCTCAACCGACGTGTCGAAGTACTTATTACGG
CTAACAACGAACTCAAACGCCAGGCAGAATCAGGAAAAATCAACCTGTAG

Upstream 100 bases:

>100_bases
TGATAAATTTTACCCCATTACCATACCGAATGGCAGGATCTCTTTTTAGTTAATTTATCAAGAGGAAAAAAATCTTTTTT
TAACCAACTATCTGAATACC

Downstream 100 bases:

>100_bases
GCTTATCTTTAACTGTTAACAGATAAAAAAAGCCGGAACAAGAAATGTCCCGGCTTTTTTTATCTCCGCACAACAAAAAA
CAAGAAACGCGACTCTGTTT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MAYVQKLTKPVAFLLILVMTTFTWGCSTTTNAGRGAGIGAGSGALIGGIIGSVSGSWVKGALIGAAIGGGAGALIGNYMD
KQAAEIDRNVEGAEVERIGEGIRVVFDSGILFNTGSSAITSTSRYNIEKLAGILAKYDDTNLIIEGHTDSVGSDSMNQTL
SENRAQSVANLLKAYGVSSSRLSAIGYGESRPIASNETESGRRLNRRVEVLITANNELKRQAESGKINL

Sequences:

>Translated_229_residues
MAYVQKLTKPVAFLLILVMTTFTWGCSTTTNAGRGAGIGAGSGALIGGIIGSVSGSWVKGALIGAAIGGGAGALIGNYMD
KQAAEIDRNVEGAEVERIGEGIRVVFDSGILFNTGSSAITSTSRYNIEKLAGILAKYDDTNLIIEGHTDSVGSDSMNQTL
SENRAQSVANLLKAYGVSSSRLSAIGYGESRPIASNETESGRRLNRRVEVLITANNELKRQAESGKINL
>Mature_228_residues
AYVQKLTKPVAFLLILVMTTFTWGCSTTTNAGRGAGIGAGSGALIGGIIGSVSGSWVKGALIGAAIGGGAGALIGNYMDK
QAAEIDRNVEGAEVERIGEGIRVVFDSGILFNTGSSAITSTSRYNIEKLAGILAKYDDTNLIIEGHTDSVGSDSMNQTLS
ENRAQSVANLLKAYGVSSSRLSAIGYGESRPIASNETESGRRLNRRVEVLITANNELKRQAESGKINL

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=199, Percent_Identity=38.6934673366834, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787191, Length=133, Percent_Identity=29.3233082706767, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788957, Length=105, Percent_Identity=40.9523809523809, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 23861; Mature: 23730

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYVQKLTKPVAFLLILVMTTFTWGCSTTTNAGRGAGIGAGSGALIGGIIGSVSGSWVKG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHH
ALIGAAIGGGAGALIGNYMDKQAAEIDRNVEGAEVERIGEGIRVVFDSGILFNTGSSAIT
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECCEEEECCCCHHH
STSRYNIEKLAGILAKYDDTNLIIEGHTDSVGSDSMNQTLSENRAQSVANLLKAYGVSSS
CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
RLSAIGYGESRPIASNETESGRRLNRRVEVLITANNELKRQAESGKINL
HEEEECCCCCCCCCCCCCHHHHHHCCEEEEEEECCHHHHHHHCCCCCCC
>Mature Secondary Structure 
AYVQKLTKPVAFLLILVMTTFTWGCSTTTNAGRGAGIGAGSGALIGGIIGSVSGSWVKG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHH
ALIGAAIGGGAGALIGNYMDKQAAEIDRNVEGAEVERIGEGIRVVFDSGILFNTGSSAIT
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECCEEEECCCCHHH
STSRYNIEKLAGILAKYDDTNLIIEGHTDSVGSDSMNQTLSENRAQSVANLLKAYGVSSS
CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
RLSAIGYGESRPIASNETESGRRLNRRVEVLITANNELKRQAESGKINL
HEEEECCCCCCCCCCCCCHHHHHHCCEEEEEEECCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1898935 [H]