| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is hsdR [H]
Identifier: 118578794
GI number: 118578794
Start: 355204
End: 357579
Strand: Direct
Name: hsdR [H]
Synonym: Ppro_0352
Alternate gene names: 118578794
Gene position: 355204-357579 (Clockwise)
Preceding gene: 118578789
Following gene: 118578795
Centisome position: 8.86
GC content: 58.5
Gene sequence:
>2376_bases GTGCACAAGAACGATCTTTCCGAGCGCGATATCTGCACCAAGTTCATCACTCCGGCGCTGGAACGTGCAGGCTGGGATGT TGCCACCCAGATACGGGAAGAGTTCCCTCTCACCAAAGGGCGCATCATCGTTCGCGGCAAGCTGCATACCCGGGCCAGGC ACAAACGCGCCGATTACGTCCTGTTCTACAAGCCGAATATTCCCATTGCCATTATCGAAGCCAAGGACAACAACCACGGC ATTGGCGATGGCATGCAACAGGCGCTGGGCTATGCCGACATGCTGCACGTCCCGTTCGTGTTCAGCTCCAACGGCGATGG TTTCCTGTTTCACAACAGGATCGCGCCGGACGGTATCATCGAGCGCGAGCTTGCACTCCATGAATTCCCGACCGCGGAAA CGCTGTGGCAATGGTGGGCGCGGCACCGTGGCCTGAATGACCGGCAGAATGCACTGGTCACGCAGGACTATTTCAGCGAC GGCAGCGATAAAAGTCCGCGCTATTACCAGTTGCTGGCCATCAACATAACCATCGAGGTCATAGCTCGGGGTCAGAATCG CATTCTGCTGGTGATGGCCACCGGCACCGGCAAGACCTTTACCGCCTTTCAGATCATCTGGCGGCTGTGGAAGTCCAAGG CGAAAAAACGCATCCTGTTCCTTGCCGACCGCAACATTCTGATCGACCAGACCATGACCAACGACTTCAAACCGTTCGGT TCGGCCATGACCAAGATCCAGAAGCGGCAGGCCAACAAGTCCTACGAGATTTACCTTTCCCTCTATCAGGCCGTCACCGG TAACGAGGAAGAGAAAAACATCTACCGGCAGTTCAGCCCCGACTTCTTCGATCTCATCGTTATCGACGAATGCCACCGGG GCAGCGCGGCCGCCGATTCGGCCTGGCGGGAGATCCTGGAGTATTTCTCATCCGCCACCCAGATCGGCATGACCGCCACC CCCAAGGAGACCAGAGAAGTCTCCAACATCGACTACTTCGGCGACCCAATCTATACCTACAGCCTCCGGCAGGGGATCGA CGACGGTTTTCTGGCCCCCTACAAGGTCGTGCGCATCGATCTCGACCGTGATGTGACCGGTTGGCGGCCCGACAAGGGGA TGGTCGACAAGCACGGCTTTGAAATCGAGGATCGCATCTACAACCAGAAGGACTTCGACAGGACCCTGGTGTTGGAGCAA CGCACCCAGCTGGTGGCACAGAAGATCACCGAGTTCCTTAAGAAAACCAACCGTTTCGACAAAGCCATCGTCTTCTGTGA AAACATTGACCATGCCGAGCGCATGCGCCAGGCCCTGGTCAATGAAAACGCCGATCTGGTGGCGCAGAACAGCACGTACG TCATGCGCATCACCGGCGACAGCGAGGAAGGCAAGGCCGAGCTGGACAACTTCATCTTCCCGGAAAGCAGATATCCGGTC ATTGCCACCACCTCCAAGCTGATGACCACCGGTGTTGACGCCCAGACCTGCAAACTCATCGTGCTCGACCAGCGCATCCA GTCCATGACCGAGTTCAAGCAGATCATCGGGCGCGGCACCCGCATCAACGAAGACTACGGCAAGTACTACTTCACCATCA TCGACTTCAAGAAGGCCACCGAGCTTTTTGCCGACCCCGATTTCGACGGTGAGCCGGTGCAGATCTACGAACCCAGGGGG GATGACTCACCGGTGCCGCCGGATGTACCGGAGGAAGGCGAACGTAGTGGCGTCACCTACCCGGAACCCGGAGAAGAGAA GGGTTGGACCGGTGTCGCCGAACCCGGCCCGGAAGGGGAAGGCGGCGTTCGCCGTTACGTCGTGGCCACTGTGGAGGTCA AGGTTGCCGCGGAGCGGGTCCAGTACTTCGATGCCGCCGGCCGCCTGATCACCGAATCCCTCAGGGACTACACCCGCAAG GCCCTGGCCAGGGAATACACCTCCCTGAATGATTTCCTCCGCCGCTGGAGCAGCACCGAGAAGAAGCAGGCCATCATCGA TGAACTCTCCGAACAGGGGGTGTTCTTCGATGCCCTTGCCGATGAGATCGGGCGGCAATCCGGCAAGGTATTCGACCCGT TCGATCTGGTCTGTCACGTTGCCTGGGGTATGCCACCCCTCACTCGCCAAGAGCGAGCCGAACAGGTGAAGAAGCGTAAC TACTTCACCCACTACGGTGAGCAGGCCCGCCGGGTGCTGGAAGCCCTGCTGGACAAATACGCCGATGAAGGCGTGGCCCA CATCGAAGAGACGCAGATTCTCACCATTGCCCCCTTTACCGAATTCGGCACCCCGCTGGAAATCATCCGTGGCTTCGGTG GGCTGGAGCAGTATCAGCAGGCGGTGCATGAGTTGGAGGAGGCTTTGTATGCCTGA
Upstream 100 bases:
>100_bases GATGTTGACGGGGGCGGCTTTTCTGTTTGTGCCGGAGGCGGCGGATGGAGAGCGGCGCTCTGCCCGGCTCTGACCGTGTA GGTAACGATGGGGATGCTCA
Downstream 100 bases:
>100_bases TAAAACAATGGCCTCACACGAAGGCACGAAGACACGAAGAACCACCCCGGCGCTTCGCGCCACCCCTCCAGAGGAGGGGA ATCTTGGGCCTCAACTTGAC
Product: EcoEI R domain-containing protein
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MHKNDLSERDICTKFITPALERAGWDVATQIREEFPLTKGRIIVRGKLHTRARHKRADYVLFYKPNIPIAIIEAKDNNHG IGDGMQQALGYADMLHVPFVFSSNGDGFLFHNRIAPDGIIERELALHEFPTAETLWQWWARHRGLNDRQNALVTQDYFSD GSDKSPRYYQLLAINITIEVIARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILIDQTMTNDFKPFG SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIVIDECHRGSAAADSAWREILEYFSSATQIGMTAT PKETREVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRIDLDRDVTGWRPDKGMVDKHGFEIEDRIYNQKDFDRTLVLEQ RTQLVAQKITEFLKKTNRFDKAIVFCENIDHAERMRQALVNENADLVAQNSTYVMRITGDSEEGKAELDNFIFPESRYPV IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKATELFADPDFDGEPVQIYEPRG DDSPVPPDVPEEGERSGVTYPEPGEEKGWTGVAEPGPEGEGGVRRYVVATVEVKVAAERVQYFDAAGRLITESLRDYTRK ALAREYTSLNDFLRRWSSTEKKQAIIDELSEQGVFFDALADEIGRQSGKVFDPFDLVCHVAWGMPPLTRQERAEQVKKRN YFTHYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRGFGGLEQYQQAVHELEEALYA
Sequences:
>Translated_791_residues MHKNDLSERDICTKFITPALERAGWDVATQIREEFPLTKGRIIVRGKLHTRARHKRADYVLFYKPNIPIAIIEAKDNNHG IGDGMQQALGYADMLHVPFVFSSNGDGFLFHNRIAPDGIIERELALHEFPTAETLWQWWARHRGLNDRQNALVTQDYFSD GSDKSPRYYQLLAINITIEVIARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILIDQTMTNDFKPFG SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIVIDECHRGSAAADSAWREILEYFSSATQIGMTAT PKETREVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRIDLDRDVTGWRPDKGMVDKHGFEIEDRIYNQKDFDRTLVLEQ RTQLVAQKITEFLKKTNRFDKAIVFCENIDHAERMRQALVNENADLVAQNSTYVMRITGDSEEGKAELDNFIFPESRYPV IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKATELFADPDFDGEPVQIYEPRG DDSPVPPDVPEEGERSGVTYPEPGEEKGWTGVAEPGPEGEGGVRRYVVATVEVKVAAERVQYFDAAGRLITESLRDYTRK ALAREYTSLNDFLRRWSSTEKKQAIIDELSEQGVFFDALADEIGRQSGKVFDPFDLVCHVAWGMPPLTRQERAEQVKKRN YFTHYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRGFGGLEQYQQAVHELEEALYA >Mature_791_residues MHKNDLSERDICTKFITPALERAGWDVATQIREEFPLTKGRIIVRGKLHTRARHKRADYVLFYKPNIPIAIIEAKDNNHG IGDGMQQALGYADMLHVPFVFSSNGDGFLFHNRIAPDGIIERELALHEFPTAETLWQWWARHRGLNDRQNALVTQDYFSD GSDKSPRYYQLLAINITIEVIARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILIDQTMTNDFKPFG SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIVIDECHRGSAAADSAWREILEYFSSATQIGMTAT PKETREVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRIDLDRDVTGWRPDKGMVDKHGFEIEDRIYNQKDFDRTLVLEQ RTQLVAQKITEFLKKTNRFDKAIVFCENIDHAERMRQALVNENADLVAQNSTYVMRITGDSEEGKAELDNFIFPESRYPV IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKATELFADPDFDGEPVQIYEPRG DDSPVPPDVPEEGERSGVTYPEPGEEKGWTGVAEPGPEGEGGVRRYVVATVEVKVAAERVQYFDAAGRLITESLRDYTRK ALAREYTSLNDFLRRWSSTEKKQAIIDELSEQGVFFDALADEIGRQSGKVFDPFDLVCHVAWGMPPLTRQERAEQVKKRN YFTHYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRGFGGLEQYQQAVHELEEALYA
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=573, Percent_Identity=28.0977312390925, Blast_Score=157, Evalue=2e-39, Organism=Escherichia coli, GI1788511, Length=422, Percent_Identity=25.5924170616114, Blast_Score=91, Evalue=3e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 90633; Mature: 90633
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKNDLSERDICTKFITPALERAGWDVATQIREEFPLTKGRIIVRGKLHTRARHKRADYV CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHCCCCEE LFYKPNIPIAIIEAKDNNHGIGDGMQQALGYADMLHVPFVFSSNGDGFLFHNRIAPDGII EEECCCCCEEEEEECCCCCCCCHHHHHHHCHHHHEEECEEEECCCCEEEEECCCCCCCHH ERELALHEFPTAETLWQWWARHRGLNDRQNALVTQDYFSDGSDKSPRYYQLLAINITIEV HHHHHHHCCCCHHHHHHHHHHHCCCCCHHCCEEEHHHHCCCCCCCCCEEEEEEEEEEEEE IARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILIDQTMTNDFKPFG EECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECHHCCCCCHHH SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIVIDECHRGSAAADS HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH AWREILEYFSSATQIGMTATPKETREVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRID HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEHHHCCCCCCCCCCEEEEEEE LDRDVTGWRPDKGMVDKHGFEIEDRIYNQKDFDRTLVLEQRTQLVAQKITEFLKKTNRFD ECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC KAIVFCENIDHAERMRQALVNENADLVAQNSTYVMRITGDSEEGKAELDNFIFPESRYPV CEEEEECCCCHHHHHHHHHHCCCCCEEEECCEEEEEEECCCCCCHHHHHHCCCCCCCCCE IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKAT EEECHHHHHCCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHH ELFADPDFDGEPVQIYEPRGDDSPVPPDVPEEGERSGVTYPEPGEEKGWTGVAEPGPEGE HHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GGVRRYVVATVEVKVAAERVQYFDAAGRLITESLRDYTRKALAREYTSLNDFLRRWSSTE CCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH KKQAIIDELSEQGVFFDALADEIGRQSGKVFDPFDLVCHVAWGMPPLTRQERAEQVKKRN HHHHHHHHHHHCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC YFTHYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRGFGGLEQYQQ HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCHHCCCHHHHHHHCCCHHHHHH AVHELEEALYA HHHHHHHHHCC >Mature Secondary Structure MHKNDLSERDICTKFITPALERAGWDVATQIREEFPLTKGRIIVRGKLHTRARHKRADYV CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHCCCCEE LFYKPNIPIAIIEAKDNNHGIGDGMQQALGYADMLHVPFVFSSNGDGFLFHNRIAPDGII EEECCCCCEEEEEECCCCCCCCHHHHHHHCHHHHEEECEEEECCCCEEEEECCCCCCCHH ERELALHEFPTAETLWQWWARHRGLNDRQNALVTQDYFSDGSDKSPRYYQLLAINITIEV HHHHHHHCCCCHHHHHHHHHHHCCCCCHHCCEEEHHHHCCCCCCCCCEEEEEEEEEEEEE IARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILIDQTMTNDFKPFG EECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECHHCCCCCHHH SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIVIDECHRGSAAADS HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH AWREILEYFSSATQIGMTATPKETREVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRID HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEHHHCCCCCCCCCCEEEEEEE LDRDVTGWRPDKGMVDKHGFEIEDRIYNQKDFDRTLVLEQRTQLVAQKITEFLKKTNRFD ECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC KAIVFCENIDHAERMRQALVNENADLVAQNSTYVMRITGDSEEGKAELDNFIFPESRYPV CEEEEECCCCHHHHHHHHHHCCCCCEEEECCEEEEEEECCCCCCHHHHHHCCCCCCCCCE IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKAT EEECHHHHHCCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHH ELFADPDFDGEPVQIYEPRGDDSPVPPDVPEEGERSGVTYPEPGEEKGWTGVAEPGPEGE HHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GGVRRYVVATVEVKVAAERVQYFDAAGRLITESLRDYTRKALAREYTSLNDFLRRWSSTE CCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH KKQAIIDELSEQGVFFDALADEIGRQSGKVFDPFDLVCHVAWGMPPLTRQERAEQVKKRN HHHHHHHHHHHCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC YFTHYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRGFGGLEQYQQ HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCHHCCCHHHHHHHCCCHHHHHH AVHELEEALYA HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]