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The map label for this gene is yvaF [H]

Identifier: 118478595

GI number: 118478595

Start: 3158638

End: 3159243

Strand: Reverse

Name: yvaF [H]

Synonym: BALH_2972

Alternate gene names: 118478595

Gene position: 3159243-3158638 (Counterclockwise)

Preceding gene: 118478596

Following gene: 118478594

Centisome position: 60.09

GC content: 31.52

Gene sequence:

>606_bases
ATGGTACCGAAAAAACTAAATTGGTACCAAAGGTTTAGGGGGCGGATTATGAAACAAAGAATAGTAACAGAAACCATTCA
TCAAATTCAAACGAAGGGGTTTACATTTACAATTAGTGATTTAGCAAAACAATTAGCTGTCAGTAAGAGGACAATCTATG
AGCACTTCTCTTCAAAAGATGAAATAGTAGATGAAGTTATTCGTAATGTAATAGAAAGTATTCAAGAAAAGGAAAAAAAT
ATCGCTGAAGACGGTACGTTACAAACAGTTGAAAAAATAAGACTCATCTTAATTTGCATTCCACAACAATTTCAATTTAT
GGATGCACGTTTATTAGTAGAACTAAAAAAACATCATTATTACCAATGGTTAAAATTAGATCAGTTTTTACGTGAAGGTT
GGTCTACTGTAATCGGTTTAATAGAAGAGGGAATGAGAGAAGGAAGCATTAGAAAGATTCAAATTCCATTTTTTATTGAA
GTGTATTTAGGGGCACTGAATCGCATATATGATCCTATGTTTATTGAAAAGAGTGATTATACATTGGGAAGTATGCTTGA
ATCGATTATGGACATGTTACTATATGGCATTTCTAATTCGAAATAA

Upstream 100 bases:

>100_bases
GGTATGATTCTCAACGCTCTTATGTTTACCTGTTTTGAGTTAAAAATAAGAAAATTCGAAATGTTAATTGTATATATTGT
GTTAAATATTGTAAAATGAA

Downstream 100 bases:

>100_bases
AAGGTGGGAGAGTAGTGCAGTGGATTTATTTAAGTTTAGCAATTTTATTTGAAGTAGCGGGTACAACTGCGATGAAACTA
TCTGATGGATTAACGAAACT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MVPKKLNWYQRFRGRIMKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKN
IAEDGTLQTVEKIRLILICIPQQFQFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIE
VYLGALNRIYDPMFIEKSDYTLGSMLESIMDMLLYGISNSK

Sequences:

>Translated_201_residues
MVPKKLNWYQRFRGRIMKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKN
IAEDGTLQTVEKIRLILICIPQQFQFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIE
VYLGALNRIYDPMFIEKSDYTLGSMLESIMDMLLYGISNSK
>Mature_201_residues
MVPKKLNWYQRFRGRIMKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKN
IAEDGTLQTVEKIRLILICIPQQFQFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIE
VYLGALNRIYDPMFIEKSDYTLGSMLESIMDMLLYGISNSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23788; Mature: 23788

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPKKLNWYQRFRGRIMKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCHH
EIVDEVIRNVIESIQEKEKNIAEDGTLQTVEKIRLILICIPQQFQFMDARLLVELKKHHY
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHH
YQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIEKSDY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEECCCCC
TLGSMLESIMDMLLYGISNSK
CHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVPKKLNWYQRFRGRIMKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCHH
EIVDEVIRNVIESIQEKEKNIAEDGTLQTVEKIRLILICIPQQFQFMDARLLVELKKHHY
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHH
YQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIEKSDY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEECCCCC
TLGSMLESIMDMLLYGISNSK
CHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]