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The map label for this gene is ydcR [C]

Identifier: 118478001

GI number: 118478001

Start: 2519554

End: 2521002

Strand: Direct

Name: ydcR [C]

Synonym: BALH_2349

Alternate gene names: 118478001

Gene position: 2519554-2521002 (Clockwise)

Preceding gene: 118478000

Following gene: 118478002

Centisome position: 47.93

GC content: 33.2

Gene sequence:

>1449_bases
TTGTTTAAAGATTTTAAAGTTGTGAAAGATCGTCCCGTTTATATTCAATTAAAAGATTATTTAAAGAAGATGATTATGAA
AGGGCATTTGCTCGGGGATCAAAAAATTCCTTCAACAAGGGAACTAAGTGAATTACTTAGTGTAAGCAGAAACACTGTAC
TCGCTGCTTATGCAGATTTAGAGCAAGAAGGGCTCATTTATGCAGTTAAAGGAAAAGGAAATTTTGTTGCGAAGGTTGAT
ATATCGAACACTTCGTCTGTTGAAATAGATTGGAAAAATAAACTTAATACAGTTACCTTATTAGCTGATGAATTAGATTT
AATGAAACATGGTGTTCGCTGGGAAAAAGGAATGATTGTTTTTAACAGCATCGCTCCGGATGAAAAGCTATTTGATGTGG
AAAATTTCAAAAGAGCTTTTCTTACTCGTATGTCCATTGAAGGTGATGTCGTATTAAACTACGGATACGCAAAAGGTTAT
AGACCGTTAATGAATTATCTACTTCATTATATGGAAATGAAAGGTGTAGATATATCGAACAAAGATATTTTAATTACAAA
TGGATTTACAGAAGGATTAGACATTGTAATATCCTCGTTGTCAAAGAAATCAGGTCGAGTTATTTGTGAGAATCCAACTC
ACCATGCTGCGCTGAAGCTATTCCGCTTACATGGCCTTGAAGTTCATGGTATTGATATGAATGAAGATGGTATTGATACG
AATCAAGTTGAAAAAAGCTTGCGTGAAAAAGAGTTTGATTTTGCGTATTTAATTCCTTCCTATCATAATCCAACCGGCAT
TGTGACGAGTTCAGAGAAAAGAACGGAATTGATGAGATTATTTTCAAAATATAAGATTCCTATTATAGAAGATGGATTTA
ATGAAGAGTTACGTTATTCAGGTTCACATTTAGCACCATTATTAACTTTTGCTGGTGCTGGTAATAATGTGATTTATATT
AGTAGCTTTTCAAAGGTACTTTTCCCTGGCTTGCGTGTAGGCTGGATCATTGCAGATAAAGAACTAATTCATTATTTAGA
AAGTGTGAAAAGAGCAAGAACAATTCACACATCTACTTTAGATCAAGCTGTTCTATTTCAATATTTACATGAAGGATATT
TTGAAAAATATTTAAAAAAGGCAAGATCTGTTTATAAGAAAAAATATGAGTTAGCTGTTGGGATGTGTAACGAGTACATT
CCGTTTCAAAGAATGACCGGTGACGGTGGACTTCATTTATTTATAGAGTTAGAAGAAAAAATTCATGCTCGTACGCTTTT
ACAAAAGTGTTATGAGCAAGGGGTTACATTTTCTCCTGGAGATGTTTTTTATTCTAATGGAGAAGGAATAAACACATTTC
GATTAGGATTTTCACGTCTGAAAGAAGAAGAAATAGTTCGGGGAATCAAAATAATCGGTGATACAATAAAAAATGAAATT
TGGAGTTGA

Upstream 100 bases:

>100_bases
GTATTTTATAAAACCGTACCGCCCTTTATAAAAAATACATATGCAGTGGACCTTTTGAGAATGAAATAAATATGCAAAAA
TAATTGCAGGGGGTAAGAAT

Downstream 100 bases:

>100_bases
GGAAATGAGAATGGGCGTTATTATGGGAGGAGTATCCTCTGAAAAACAAGTATCAATTATGACTGGAAATGAAATGATTG
CACATTTAGATAAAAATAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MFKDFKVVKDRPVYIQLKDYLKKMIMKGHLLGDQKIPSTRELSELLSVSRNTVLAAYADLEQEGLIYAVKGKGNFVAKVD
ISNTSSVEIDWKNKLNTVTLLADELDLMKHGVRWEKGMIVFNSIAPDEKLFDVENFKRAFLTRMSIEGDVVLNYGYAKGY
RPLMNYLLHYMEMKGVDISNKDILITNGFTEGLDIVISSLSKKSGRVICENPTHHAALKLFRLHGLEVHGIDMNEDGIDT
NQVEKSLREKEFDFAYLIPSYHNPTGIVTSSEKRTELMRLFSKYKIPIIEDGFNEELRYSGSHLAPLLTFAGAGNNVIYI
SSFSKVLFPGLRVGWIIADKELIHYLESVKRARTIHTSTLDQAVLFQYLHEGYFEKYLKKARSVYKKKYELAVGMCNEYI
PFQRMTGDGGLHLFIELEEKIHARTLLQKCYEQGVTFSPGDVFYSNGEGINTFRLGFSRLKEEEIVRGIKIIGDTIKNEI
WS

Sequences:

>Translated_482_residues
MFKDFKVVKDRPVYIQLKDYLKKMIMKGHLLGDQKIPSTRELSELLSVSRNTVLAAYADLEQEGLIYAVKGKGNFVAKVD
ISNTSSVEIDWKNKLNTVTLLADELDLMKHGVRWEKGMIVFNSIAPDEKLFDVENFKRAFLTRMSIEGDVVLNYGYAKGY
RPLMNYLLHYMEMKGVDISNKDILITNGFTEGLDIVISSLSKKSGRVICENPTHHAALKLFRLHGLEVHGIDMNEDGIDT
NQVEKSLREKEFDFAYLIPSYHNPTGIVTSSEKRTELMRLFSKYKIPIIEDGFNEELRYSGSHLAPLLTFAGAGNNVIYI
SSFSKVLFPGLRVGWIIADKELIHYLESVKRARTIHTSTLDQAVLFQYLHEGYFEKYLKKARSVYKKKYELAVGMCNEYI
PFQRMTGDGGLHLFIELEEKIHARTLLQKCYEQGVTFSPGDVFYSNGEGINTFRLGFSRLKEEEIVRGIKIIGDTIKNEI
WS
>Mature_482_residues
MFKDFKVVKDRPVYIQLKDYLKKMIMKGHLLGDQKIPSTRELSELLSVSRNTVLAAYADLEQEGLIYAVKGKGNFVAKVD
ISNTSSVEIDWKNKLNTVTLLADELDLMKHGVRWEKGMIVFNSIAPDEKLFDVENFKRAFLTRMSIEGDVVLNYGYAKGY
RPLMNYLLHYMEMKGVDISNKDILITNGFTEGLDIVISSLSKKSGRVICENPTHHAALKLFRLHGLEVHGIDMNEDGIDT
NQVEKSLREKEFDFAYLIPSYHNPTGIVTSSEKRTELMRLFSKYKIPIIEDGFNEELRYSGSHLAPLLTFAGAGNNVIYI
SSFSKVLFPGLRVGWIIADKELIHYLESVKRARTIHTSTLDQAVLFQYLHEGYFEKYLKKARSVYKKKYELAVGMCNEYI
PFQRMTGDGGLHLFIELEEKIHARTLLQKCYEQGVTFSPGDVFYSNGEGINTFRLGFSRLKEEEIVRGIKIIGDTIKNEI
WS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=408, Percent_Identity=23.2843137254902, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI33469970, Length=408, Percent_Identity=23.2843137254902, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI1787710, Length=476, Percent_Identity=25.6302521008403, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1790797, Length=469, Percent_Identity=23.8805970149254, Blast_Score=139, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6321236, Length=395, Percent_Identity=22.7848101265823, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21356535, Length=333, Percent_Identity=23.7237237237237, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 55143; Mature: 55143

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKDFKVVKDRPVYIQLKDYLKKMIMKGHLLGDQKIPSTRELSELLSVSRNTVLAAYADL
CCCCCEEECCCCEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
EQEGLIYAVKGKGNFVAKVDISNTSSVEIDWKNKLNTVTLLADELDLMKHGVRWEKGMIV
CCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEHHHHHHHHCCCCCCCCEEE
FNSIAPDEKLFDVENFKRAFLTRMSIEGDVVLNYGYAKGYRPLMNYLLHYMEMKGVDISN
EECCCCCCHHHCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
KDILITNGFTEGLDIVISSLSKKSGRVICENPTHHAALKLFRLHGLEVHGIDMNEDGIDT
CCEEEECCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCH
NQVEKSLREKEFDFAYLIPSYHNPTGIVTSSEKRTELMRLFSKYKIPIIEDGFNEELRYS
HHHHHHHHHHCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCEEECCCCHHHHCC
GSHLAPLLTFAGAGNNVIYISSFSKVLFPGLRVGWIIADKELIHYLESVKRARTIHTSTL
CCCHHHHHHEECCCCCEEEEECCHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
DQAVLFQYLHEGYFEKYLKKARSVYKKKYELAVGMCNEYIPFQRMTGDGGLHLFIELEEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEHHH
IHARTLLQKCYEQGVTFSPGDVFYSNGEGINTFRLGFSRLKEEEIVRGIKIIGDTIKNEI
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
WS
CC
>Mature Secondary Structure
MFKDFKVVKDRPVYIQLKDYLKKMIMKGHLLGDQKIPSTRELSELLSVSRNTVLAAYADL
CCCCCEEECCCCEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
EQEGLIYAVKGKGNFVAKVDISNTSSVEIDWKNKLNTVTLLADELDLMKHGVRWEKGMIV
CCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEHHHHHHHHCCCCCCCCEEE
FNSIAPDEKLFDVENFKRAFLTRMSIEGDVVLNYGYAKGYRPLMNYLLHYMEMKGVDISN
EECCCCCCHHHCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
KDILITNGFTEGLDIVISSLSKKSGRVICENPTHHAALKLFRLHGLEVHGIDMNEDGIDT
CCEEEECCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCH
NQVEKSLREKEFDFAYLIPSYHNPTGIVTSSEKRTELMRLFSKYKIPIIEDGFNEELRYS
HHHHHHHHHHCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHHCCCCEEECCCCHHHHCC
GSHLAPLLTFAGAGNNVIYISSFSKVLFPGLRVGWIIADKELIHYLESVKRARTIHTSTL
CCCHHHHHHEECCCCCEEEEECCHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
DQAVLFQYLHEGYFEKYLKKARSVYKKKYELAVGMCNEYIPFQRMTGDGGLHLFIELEEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEHHH
IHARTLLQKCYEQGVTFSPGDVFYSNGEGINTFRLGFSRLKEEEIVRGIKIIGDTIKNEI
HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
WS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]