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The map label for this gene is rfaH [H]

Identifier: 117919822

GI number: 117919822

Start: 1587769

End: 1588269

Strand: Direct

Name: rfaH [H]

Synonym: Shewana3_1374

Alternate gene names: 117919822

Gene position: 1587769-1588269 (Clockwise)

Preceding gene: 117919820

Following gene: 117919823

Centisome position: 31.93

GC content: 42.91

Gene sequence:

>501_bases
ATGAAGGCATGGTACCTTTTGTATTGTAAACCTCGAAGTGAAGCGAGGGCACAACAGAACTTAGCGCTTCAAAATTTAGA
GACATACTTACCGATGGTTTCTGAAGAAAAATCTCAACGCGGGCAGAAGCGGATCTGTCGCGTACCTCTATTCCCAAATT
ATCTGTTCATCAATTTCGACCCAAGCCAAACCAGTGTTAAGCAGGTCAACTCTACTCGTGGAGTGAGCCGTATCGTCAAC
TGTCAGGAAAAAATGACTCCCATTGACGATCGTATTATTCACGCCATTCGCATGAAAGAATTAACGCCTTCCCAAGCGGT
TTTAGACCATGAATTAGAACTAAAAACCGGGGAAAAAATTCGCTTTAAAGACGGCCCTTTTGTGGATTTAGAAGGCATTT
TTCAAGAGAAATGCCCGAACAAGCGCTGTCATGTATTGTTCAATATTATGGGGCAGAGCAAAGTCGTTACTGTTCCTCAG
GATTCTGTAGTGAGACTATAG

Upstream 100 bases:

>100_bases
CCTTTTGCGCCAAAAAACTGCTTCCATCCCTATTCACAACTTTGCTATGATTGCGAGCCGTGAATGGACGTCACTTAACA
TAGGGTAGTGAGATTAGTAG

Downstream 100 bases:

>100_bases
AGTGCTTTGAAATTGAGTATCTTACTTAAGTTATTCGCTAAAATAGCGGATTAGCCTTAGCAATGCTTAAATTCTCTGCA
GTGTAATATGTAAAATATAT

Product: transcription antitermination protein nusG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFDPSQTSVKQVNSTRGVSRIVN
CQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKIRFKDGPFVDLEGIFQEKCPNKRCHVLFNIMGQSKVVTVPQ
DSVVRL

Sequences:

>Translated_166_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFDPSQTSVKQVNSTRGVSRIVN
CQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKIRFKDGPFVDLEGIFQEKCPNKRCHVLFNIMGQSKVVTVPQ
DSVVRL
>Mature_166_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFDPSQTSVKQVNSTRGVSRIVN
CQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKIRFKDGPFVDLEGIFQEKCPNKRCHVLFNIMGQSKVVTVPQ
DSVVRL

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=152, Percent_Identity=32.8947368421053, Blast_Score=93, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 19223; Mature: 19223

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCEEEEEEC
PSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKI
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCEEECCCCEE
RFKDGPFVDLEGIFQEKCPNKRCHVLFNIMGQSKVVTVPQDSVVRL
EECCCCEECHHHHHHHCCCCCCEEEEEEECCCCEEEECCCCCEECC
>Mature Secondary Structure
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCEEEEEEC
PSQTSVKQVNSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHELELKTGEKI
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCEEECCCCEE
RFKDGPFVDLEGIFQEKCPNKRCHVLFNIMGQSKVVTVPQDSVVRL
EECCCCEECHHHHHHHCCCCCCEEEEEEECCCCEEEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]