| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is kpsD [H]
Identifier: 117919823
GI number: 117919823
Start: 1588920
End: 1591433
Strand: Direct
Name: kpsD [H]
Synonym: Shewana3_1375
Alternate gene names: 117919823
Gene position: 1588920-1591433 (Clockwise)
Preceding gene: 117919822
Following gene: 117919824
Centisome position: 31.96
GC content: 43.91
Gene sequence:
>2514_bases GTGTTACAACAATTCAAAAAATACATCAAAGCGGTTCCCAAAACCGCAATATTAGTAGGCATCACTGCCACGATATTGAT GGGCACATCGGCGCAAGCTATTACGCCCTCTCCGCAGATGATAGAACAATTCAAACAACTACCTAAGTCAGAGCAAGAAC GTTTAGCTCGCCAATACGGTATTGATCCGTCAATGATTACGGGGTCCTCAACTACTGCTACTGTTGTTGAAAACCCAACT GTAGTTACGCCACGAACGGAAACTGGTAATAACGTCATCGATCAATCTGAGGACGATAAACTTAACCAGGCAACCAAAAC GGAAGCTAAGGTTGAAGCGATTGAAAGCAAAAAAGAAGATCAGCTAAAACGCTTTGGCTATGACTTATTTGCTGGTTCTC CAAGTACGTTTGCTCCCGTTTCTGACGTACCAGTGCCTGCTGAATACATGATGGGCCCAGGTGATACCTTAAATGTGCAG TTTTTTGGTAAAGAAAATAATCAGTTCACGTTAACCGTGGGCCGTGATGGTGCAGTGCAATTCCCTAACTTGGGGCCTAT CTCACTAGTAGGCTTAACCTTTGCTGAAACACGCGAGCTATTACAACAAAAAATCAGCCAAAGCATGATAGGTATTGAGT CCAATATCACTATGGGTGAGTTGCGTTCAATCCGGATTTTTGTGGCTGGTGATGCTTACAAACCTGGCTCTTACACTGTG TCGAGTTTATCGACCATTACTCAAGCGCTGTTTATCTCGGGTGGCGTAAACCAAATCGGTAGCTTGCGTGATATCCAATT AAAGCGCTCTGGTAAAACTATTGGCCGTTTAGACTTATATGATTTATTGCTTCGCGGCGATGCGTCAGGCGATATGCGTT TACAATCCGGTGATGTGGTATTTGTTCCATCTACTGGGGGGACAGTGAGTGTTATAGGTGAAGTGCGTCGCCCTGCTATT TACGAGCTTAAAAATAACGAAACCATGGCCGATGTGATTAATATGGCTAGTGGTTTAAACCCAGGTGCATATCCCAAAGC CAGTACCATTGAACGTTATAGTCGTGAAGCGGTAAAAACCGTGGTAAGTGTTGATTTAACCGAAAATTCAGGCTTAAGTA CGTTAGCGAAAAATGGCGATTTACTTAATGTTCGCTCTGCTTCAAGCCGTATTGATAATGCTATTACGGTCTCGGGTGCA GTAATCCGCCCAGGTAAATATCAATGGACAAATGGGCTAACAGTTGCCGATTTATTGCCTTCCATTTGGGGGGATTTAAC CATCTCCGCAGATTTGGATTACAGCTTATTGGTAAGAGAAATCAACCAACGTGGTGATATCGAAGTCGAGCGCATCAACC TCGGTCGCGCAATTGGTGAGCCAAAATCACATTACAACCCCACACTAAAACCACGAGATTCGGTCATTGTATTTGACTAT GCCGATCGTGAATCGCTGCTTAAGCCCATTATTAAAAAGCTAAAAGAGCAAAGCCGTTTTGGCGATGCCGCTAAACTGGT TAATATCAATGGGAATGTACGCTTCCCTGGTCAGTATCCAATAACGGTTAATGCCGATGTTAAAGAGTTACTTATAGCTG CAGGCGGGCTAGAAGAAGGTGCATATACCCTATCAGCAGAGCTGACTCGTCAACAAGTGTCTGAGCAAAATGGGGTTAAA GTAGAACATGTACAGCTTAGCTTGGATCGCGTTATGCAAAATGATCCGGCAGCCAATATCAAACTGCAAAGCCGTGACAT CTTAACCGTACGTACGTTGCCAGACTGGCAAGAAACTCGCTGGGTCACCATTAAAGGTGAAGTTAAATTCCCTGGCACTT ACAGTATCCAGCGCGGCGAAACCTTAAAACAAGTGCTTGCCCGTGCTGGTGGTATGACGAGTGATGCTGCACCACGCAGT GCAGTCTTTTTACGCAAATCGATCCAACAAAAAGAACAGCAAGAACTTGCAAAGCTTGCCGATGAATTGCGCCGGGAGAT TGCTGCAAAAGCCTTGACCAAAGATACGCCTACCATTGGTTATAACGATGCACAAATGATGTTAAATCAATTGGAAAACG TTAAAACAGTTGGTCGCTTAGTCGTCGATGTTAATGCGATTGAATTAGGCATCGAAAGTGCTGATTTAATGTTGGAAGAT TCTGATGCCTTATATGTTCCTGCTATAAATCAAACAGTATCAGTAATGGGGCAAGTGCAGCATCCAAGTACTCATCGCTT TAAAACTGGATTAACGTTTGAACAATATCTAGCGTTATCCGGCGGTCCACGTAAACGTGCTGATGAATCTCGCACTTATA TATTAAAAGCTGATGGCTCGGTACAAATGCCAGAATCTTCATTGTGGTTTACTGGCGGTAGCTCAATGGAACCTGGTGAC ACCATAGTTGTACCATTAGATACCGAATACAAAGATAATCTAACGTTGTGGACTCAAGTTACGAGCATTATCTACAACAC CGCCGTCGCTGTATCCGCAATATCGGGGATTTAG
Upstream 100 bases:
>100_bases CGCAAGTTAGCTTAAGTACAATCTTCTCGCTGGGCGAAACCCAATCAGCCTTTAAAGTTTTTAATGTTTTCCATCATTTT TACCCAATCGGAGATATCTG
Downstream 100 bases:
>100_bases AACGCCACTTCGTGGCTCACGGATGTTAATAGGATAACGGAACGGGCTTAGCTCTCACGGTAAACGCAGCGCTCTTAGTT TTTGCCCTTACCGTAGGCGA
Product: polysaccharide export protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MLQQFKKYIKAVPKTAILVGITATILMGTSAQAITPSPQMIEQFKQLPKSEQERLARQYGIDPSMITGSSTTATVVENPT VVTPRTETGNNVIDQSEDDKLNQATKTEAKVEAIESKKEDQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQ FFGKENNQFTLTVGRDGAVQFPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTV SSLSTITQALFISGGVNQIGSLRDIQLKRSGKTIGRLDLYDLLLRGDASGDMRLQSGDVVFVPSTGGTVSVIGEVRRPAI YELKNNETMADVINMASGLNPGAYPKASTIERYSREAVKTVVSVDLTENSGLSTLAKNGDLLNVRSASSRIDNAITVSGA VIRPGKYQWTNGLTVADLLPSIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPTLKPRDSVIVFDY ADRESLLKPIIKKLKEQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELTRQQVSEQNGVK VEHVQLSLDRVMQNDPAANIKLQSRDILTVRTLPDWQETRWVTIKGEVKFPGTYSIQRGETLKQVLARAGGMTSDAAPRS AVFLRKSIQQKEQQELAKLADELRREIAAKALTKDTPTIGYNDAQMMLNQLENVKTVGRLVVDVNAIELGIESADLMLED SDALYVPAINQTVSVMGQVQHPSTHRFKTGLTFEQYLALSGGPRKRADESRTYILKADGSVQMPESSLWFTGGSSMEPGD TIVVPLDTEYKDNLTLWTQVTSIIYNTAVAVSAISGI
Sequences:
>Translated_837_residues MLQQFKKYIKAVPKTAILVGITATILMGTSAQAITPSPQMIEQFKQLPKSEQERLARQYGIDPSMITGSSTTATVVENPT VVTPRTETGNNVIDQSEDDKLNQATKTEAKVEAIESKKEDQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQ FFGKENNQFTLTVGRDGAVQFPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTV SSLSTITQALFISGGVNQIGSLRDIQLKRSGKTIGRLDLYDLLLRGDASGDMRLQSGDVVFVPSTGGTVSVIGEVRRPAI YELKNNETMADVINMASGLNPGAYPKASTIERYSREAVKTVVSVDLTENSGLSTLAKNGDLLNVRSASSRIDNAITVSGA VIRPGKYQWTNGLTVADLLPSIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPTLKPRDSVIVFDY ADRESLLKPIIKKLKEQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELTRQQVSEQNGVK VEHVQLSLDRVMQNDPAANIKLQSRDILTVRTLPDWQETRWVTIKGEVKFPGTYSIQRGETLKQVLARAGGMTSDAAPRS AVFLRKSIQQKEQQELAKLADELRREIAAKALTKDTPTIGYNDAQMMLNQLENVKTVGRLVVDVNAIELGIESADLMLED SDALYVPAINQTVSVMGQVQHPSTHRFKTGLTFEQYLALSGGPRKRADESRTYILKADGSVQMPESSLWFTGGSSMEPGD TIVVPLDTEYKDNLTLWTQVTSIIYNTAVAVSAISGI >Mature_837_residues MLQQFKKYIKAVPKTAILVGITATILMGTSAQAITPSPQMIEQFKQLPKSEQERLARQYGIDPSMITGSSTTATVVENPT VVTPRTETGNNVIDQSEDDKLNQATKTEAKVEAIESKKEDQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQ FFGKENNQFTLTVGRDGAVQFPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTV SSLSTITQALFISGGVNQIGSLRDIQLKRSGKTIGRLDLYDLLLRGDASGDMRLQSGDVVFVPSTGGTVSVIGEVRRPAI YELKNNETMADVINMASGLNPGAYPKASTIERYSREAVKTVVSVDLTENSGLSTLAKNGDLLNVRSASSRIDNAITVSGA VIRPGKYQWTNGLTVADLLPSIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPTLKPRDSVIVFDY ADRESLLKPIIKKLKEQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEGAYTLSAELTRQQVSEQNGVK VEHVQLSLDRVMQNDPAANIKLQSRDILTVRTLPDWQETRWVTIKGEVKFPGTYSIQRGETLKQVLARAGGMTSDAAPRS AVFLRKSIQQKEQQELAKLADELRREIAAKALTKDTPTIGYNDAQMMLNQLENVKTVGRLVVDVNAIELGIESADLMLED SDALYVPAINQTVSVMGQVQHPSTHRFKTGLTFEQYLALSGGPRKRADESRTYILKADGSVQMPESSLWFTGGSSMEPGD TIVVPLDTEYKDNLTLWTQVTSIIYNTAVAVSAISGI
Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli K5 kpsD [H]
Homologues:
Organism=Escherichia coli, GI1787218, Length=210, Percent_Identity=25.7142857142857, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1788376, Length=209, Percent_Identity=24.4019138755981, Blast_Score=73, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 [H]
Pfam domain/function: PF02563 Poly_export [H]
EC number: NA
Molecular weight: Translated: 91385; Mature: 91385
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS00144 ASN_GLN_ASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQQFKKYIKAVPKTAILVGITATILMGTSAQAITPSPQMIEQFKQLPKSEQERLARQYG CHHHHHHHHHHCCCCEEEHEEHHHEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHC IDPSMITGSSTTATVVENPTVVTPRTETGNNVIDQSEDDKLNQATKTEAKVEAIESKKED CCCCEEECCCCEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQFFGKENNQFTLTVGRDGAVQ HHHHCCCCEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCEEEEEECCCCCEE FPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTV CCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHCCEEEEEEEECCCCCCCCEEH SSLSTITQALFISGGVNQIGSLRDIQLKRSGKTIGRLDLYDLLLRGDASGDMRLQSGDVV HHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEECCCEE FVPSTGGTVSVIGEVRRPAIYELKNNETMADVINMASGLNPGAYPKASTIERYSREAVKT EEECCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH VVSVDLTENSGLSTLAKNGDLLNVRSASSRIDNAITVSGAVIRPGKYQWTNGLTVADLLP EEEEEECCCCCCHHHHCCCCEEEEECHHHHCCCEEEECCEEECCCCEECCCCCCHHHHHH SIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPTLKPRDSVIVFDY HHHCCEEEECCCCHHHHHHHHHCCCCEEEEEEECCHHCCCCHHHCCCCCCCCCCEEEEEE ADRESLLKPIIKKLKEQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEG CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCCCEEECCCHHHHHHHCCCCCCC AYTLSAELTRQQVSEQNGVKVEHVQLSLDRVMQNDPAANIKLQSRDILTVRTLPDWQETR CEEEHHHHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCE WVTIKGEVKFPGTYSIQRGETLKQVLARAGGMTSDAAPRSAVFLRKSIQQKEQQELAKLA EEEEEEEEECCCCEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DELRREIAAKALTKDTPTIGYNDAQMMLNQLENVKTVGRLVVDVNAIELGIESADLMLED HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEHHEECCCCCCEEEEC SDALYVPAINQTVSVMGQVQHPSTHRFKTGLTFEQYLALSGGPRKRADESRTYILKADGS CCEEEECCCHHHHHHHEECCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCEEEEECCCC VQMPESSLWFTGGSSMEPGDTIVVPLDTEYKDNLTLWTQVTSIIYNTAVAVSAISGI EECCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLQQFKKYIKAVPKTAILVGITATILMGTSAQAITPSPQMIEQFKQLPKSEQERLARQYG CHHHHHHHHHHCCCCEEEHEEHHHEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHC IDPSMITGSSTTATVVENPTVVTPRTETGNNVIDQSEDDKLNQATKTEAKVEAIESKKED CCCCEEECCCCEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QLKRFGYDLFAGSPSTFAPVSDVPVPAEYMMGPGDTLNVQFFGKENNQFTLTVGRDGAVQ HHHHCCCCEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCEEEEEECCCCCEE FPNLGPISLVGLTFAETRELLQQKISQSMIGIESNITMGELRSIRIFVAGDAYKPGSYTV CCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHCCEEEEEEEECCCCCCCCEEH SSLSTITQALFISGGVNQIGSLRDIQLKRSGKTIGRLDLYDLLLRGDASGDMRLQSGDVV HHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEECCCEE FVPSTGGTVSVIGEVRRPAIYELKNNETMADVINMASGLNPGAYPKASTIERYSREAVKT EEECCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH VVSVDLTENSGLSTLAKNGDLLNVRSASSRIDNAITVSGAVIRPGKYQWTNGLTVADLLP EEEEEECCCCCCHHHHCCCCEEEEECHHHHCCCEEEECCEEECCCCEECCCCCCHHHHHH SIWGDLTISADLDYSLLVREINQRGDIEVERINLGRAIGEPKSHYNPTLKPRDSVIVFDY HHHCCEEEECCCCHHHHHHHHHCCCCEEEEEEECCHHCCCCHHHCCCCCCCCCCEEEEEE ADRESLLKPIIKKLKEQSRFGDAAKLVNINGNVRFPGQYPITVNADVKELLIAAGGLEEG CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCCCEEECCCHHHHHHHCCCCCCC AYTLSAELTRQQVSEQNGVKVEHVQLSLDRVMQNDPAANIKLQSRDILTVRTLPDWQETR CEEEHHHHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCE WVTIKGEVKFPGTYSIQRGETLKQVLARAGGMTSDAAPRSAVFLRKSIQQKEQQELAKLA EEEEEEEEECCCCEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DELRREIAAKALTKDTPTIGYNDAQMMLNQLENVKTVGRLVVDVNAIELGIESADLMLED HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEHHEECCCCCCEEEEC SDALYVPAINQTVSVMGQVQHPSTHRFKTGLTFEQYLALSGGPRKRADESRTYILKADGS CCEEEECCCHHHHHHHEECCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCEEEEECCCC VQMPESSLWFTGGSSMEPGDTIVVPLDTEYKDNLTLWTQVTSIIYNTAVAVSAISGI EECCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021185 [H]