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The map label for this gene is yciH [H]

Identifier: 117919650

GI number: 117919650

Start: 1407047

End: 1407376

Strand: Reverse

Name: yciH [H]

Synonym: Shewana3_1201

Alternate gene names: 117919650

Gene position: 1407376-1407047 (Counterclockwise)

Preceding gene: 117919651

Following gene: 117919649

Centisome position: 28.3

GC content: 46.67

Gene sequence:

>330_bases
ATGAGAGTAGATCCCAACGTTTCCTTAGTGTACAGCACAGATAAAGGCCGCATTACTGCCGAGCCAGAAGCCAAAGCTAT
CCCCGCATCCGATGGGATTGTGCGTATCCACAGAGACAGCAAAGGCCGCAAAGGTAAAGGTGTCTCGGTCATTTCAGGCC
TAGGGCTTGATGAAGCGGGCTTAAAAGCCCTGGCACAAACCCTTAAAAAACAATGTGGTTGTGGTGGCACAGTCAAAGAT
TTCACTATCGAAGTGCAAACCGATAATCGTGAACAACTAAAACAACTGCTTGAAAAACAAAACTACAAAGTCAAATTAGC
CGGCGGTTGA

Upstream 100 bases:

>100_bases
TCGGCCACTTTCAGTCTCTGTCAGTGGCCTTTTTTTACCTCCCCGAAAGACGTTGAGTTTGGTAAACTTAAGCGGCGTAT
ATTCAGATAAAAGATGACTT

Downstream 100 bases:

>100_bases
TACGCCACCAGCCTAAGCCGCTGGATTTAATCTATTGGTCAACGCCTGTGGGCTGAACGGAGCATTTAATGGAGAGTTTG
CAGAACCATTTTTTAATCGC

Product: translation initiation factor Sui1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MRVDPNVSLVYSTDKGRITAEPEAKAIPASDGIVRIHRDSKGRKGKGVSVISGLGLDEAGLKALAQTLKKQCGCGGTVKD
FTIEVQTDNREQLKQLLEKQNYKVKLAGG

Sequences:

>Translated_109_residues
MRVDPNVSLVYSTDKGRITAEPEAKAIPASDGIVRIHRDSKGRKGKGVSVISGLGLDEAGLKALAQTLKKQCGCGGTVKD
FTIEVQTDNREQLKQLLEKQNYKVKLAGG
>Mature_109_residues
MRVDPNVSLVYSTDKGRITAEPEAKAIPASDGIVRIHRDSKGRKGKGVSVISGLGLDEAGLKALAQTLKKQCGCGGTVKD
FTIEVQTDNREQLKQLLEKQNYKVKLAGG

Specific function: Unknown

COG id: COG0023

COG function: function code J; Translation initiation factor 1 (eIF-1/SUI1) and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SUI1 family [H]

Homologues:

Organism=Escherichia coli, GI87081867, Length=107, Percent_Identity=58.8785046728972, Blast_Score=115, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005872
- InterPro:   IPR001950 [H]

Pfam domain/function: PF01253 SUI1 [H]

EC number: NA

Molecular weight: Translated: 11695; Mature: 11695

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50296 SUI1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVDPNVSLVYSTDKGRITAEPEAKAIPASDGIVRIHRDSKGRKGKGVSVISGLGLDEAG
CCCCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHH
LKALAQTLKKQCGCGGTVKDFTIEVQTDNREQLKQLLEKQNYKVKLAGG
HHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure
MRVDPNVSLVYSTDKGRITAEPEAKAIPASDGIVRIHRDSKGRKGKGVSVISGLGLDEAG
CCCCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHH
LKALAQTLKKQCGCGGTVKDFTIEVQTDNREQLKQLLEKQNYKVKLAGG
HHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2956254; 9097039; 9278503; 10497266 [H]