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The map label for this gene is yqgF [C]

Identifier: 117919648

GI number: 117919648

Start: 1405961

End: 1406386

Strand: Reverse

Name: yqgF [C]

Synonym: Shewana3_1199

Alternate gene names: 117919648

Gene position: 1406386-1405961 (Counterclockwise)

Preceding gene: 117919649

Following gene: 117919643

Centisome position: 28.28

GC content: 45.07

Gene sequence:

>426_bases
ATGAACGCAAAAACCGTTTTAGGTTTTGATTTTGGAACAAAAAGTATTGGTGTCGCCATAGGGCAACAAATCACCGCCAG
CGCCACGCCACTATTATCCCTAAAAGCCGTCGATGGTATTCCCAATTGGGATGAAATCGGCAAGCTCATTAAAGAGTGGC
AACCCGATTTAGTCGTCGTAGGTTTACCGCTCAATATGGATGGTACAGAGCAAGAGATGACCCACAGGGCGAGAAAATTT
GCCAACCGCCTGAACGCTAAGTTTGGGGTTAAAATTGTCACTCAAGATGAAAGACTGACCACCACAGATGCAAAAGCTCG
GTTATTTGAACTCGGTGGCTTTAAAGCCCTCACCAAAGGTCAAGTCGATGCCGTGTCTGCCGTATTGATTGTCGAAAGCT
ATTTTGAAAATCATTTCGGTGAATGA

Upstream 100 bases:

>100_bases
AGATGGCAACAAGCGAGCCGCGCGCTCGGCTTTGATGCTTGGCAATTGTCATCACAGGCGGGCCACGCCTAGCCGATTTT
ATTGTGACGAGTGAATATAG

Downstream 100 bases:

>100_bases
TAAGTCGTAAAAACAAAAGGATAGCCTGAGCTATCCTTTTTTATTTCTACGGTTATAAAGCTTACAGATGGGGCTTAACC
AAGTTAGCCATCATGCTGAT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MNAKTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVGLPLNMDGTEQEMTHRARKF
ANRLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQVDAVSAVLIVESYFENHFGE

Sequences:

>Translated_141_residues
MNAKTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVGLPLNMDGTEQEMTHRARKF
ANRLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQVDAVSAVLIVESYFENHFGE
>Mature_141_residues
MNAKTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVGLPLNMDGTEQEMTHRARKF
ANRLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQVDAVSAVLIVESYFENHFGE

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=62.2222222222222, Blast_Score=188, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15407; Mature: 15407

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVV
CCCCEEEEECCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
GLPLNMDGTEQEMTHRARKFANRLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKG
EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCHHHHHHHHCCCCEECCCC
QVDAVSAVLIVESYFENHFGE
CHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNAKTVLGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVV
CCCCEEEEECCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEE
GLPLNMDGTEQEMTHRARKFANRLNAKFGVKIVTQDERLTTTDAKARLFELGGFKALTKG
EECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCHHHHHHHHCCCCEECCCC
QVDAVSAVLIVESYFENHFGE
CHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]