Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 117919643

GI number: 117919643

Start: 1401225

End: 1401941

Strand: Reverse

Name: yggS [C]

Synonym: Shewana3_1194

Alternate gene names: 117919643

Gene position: 1401941-1401225 (Counterclockwise)

Preceding gene: 117919648

Following gene: 117919642

Centisome position: 28.2

GC content: 50.21

Gene sequence:

>717_bases
ATGACAACAATAGCAGACAGACTCGCAGTCGCCCAGAGCAGGATCGCGCAAGCGGCGCAAAAATGCGCACGCCTACCTCA
CAGTATTCGCTTACTTGCCGTCAGTAAGACTAAACCCATGGAAGATATTATAGCAGCCTATAATGCGGGCCAGCGTTGCT
TTGGCGAGAACTATGTTCAAGAAGGTGTGACAAAAATTGAGGCGCTAAAGGCCACGCACCCTGATATTGAATGGCATTTT
ATTGGGCCACTGCAATCCAATAAAACCGCTTTAGTCGCCCAGCACTTCGATTGGATGCATACCCTCTCGCGGGAGAAAAT
TGCCCAGCGCCTCAATGAGCAGCGCCCAGCACACCTTGCGCCGCTCAAGGTGTGTATTCAAATCAACATCAGTGATGAAT
ACACAAAATCCGGTATCGATGCCGAGCAGATGCTGCCACTGGCCGATAGCATCAGCCAATTACCCCATTTACAACTGCGG
GGCTTAATGGCGATTCCCAGTGCCACCAATGACATCGCGCAGCAGACCGACGAACTCAGCAAGCTTAAGCAGTTATTCGA
TACATTAAAACAGCATTATCCCGCGGTAGATACTCTCTCCATGGGCATGAGTAATGACTTAGACGTCGCTGTTGAGTGCG
GCTCAACCATGGTGCGTATCGGCAGCGCCATCTTTGGTGAACGGGATTATGGTGTAAAAGACACCACCAGCAATTAA

Upstream 100 bases:

>100_bases
GCAGAGAGGTGTAGATCCGAGGCTTTGTGTTTTACACTAAAGGCTAATAACTCAGTGATTTCCATAGTTTGGGATATCCT
TGCAACCAGATAATTACATC

Downstream 100 bases:

>100_bases
TCGGTACGGATTAAACCGTCATCACTGATGCTAAGGGAAATGACAGAGATAGCCAAAGGTGCGCCAGCAAAATCGGCTTT
AGCCTTGTTTTTAGTGGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTTIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPMEDIIAAYNAGQRCFGENYVQEGVTKIEALKATHPDIEWHF
IGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPLKVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLR
GLMAIPSATNDIAQQTDELSKLKQLFDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGSAIFGERDYGVKDTTSN

Sequences:

>Translated_238_residues
MTTIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPMEDIIAAYNAGQRCFGENYVQEGVTKIEALKATHPDIEWHF
IGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPLKVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLR
GLMAIPSATNDIAQQTDELSKLKQLFDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGSAIFGERDYGVKDTTSN
>Mature_237_residues
TTIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPMEDIIAAYNAGQRCFGENYVQEGVTKIEALKATHPDIEWHFI
GPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPLKVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLRG
LMAIPSATNDIAQQTDELSKLKQLFDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGSAIFGERDYGVKDTTSN

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=245, Percent_Identity=42.4489795918367, Blast_Score=144, Evalue=6e-35,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=55.5555555555556, Blast_Score=262, Evalue=2e-71,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=38.6666666666667, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6319435, Length=210, Percent_Identity=37.1428571428571, Blast_Score=112, Evalue=7e-26,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=45.0236966824645, Blast_Score=146, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26339; Mature: 26208

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPMEDIIAAYNAGQRCFGENYVQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHH
EGVTKIEALKATHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLA
HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLKVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLRGLMAIPSATNDIAQQTDELS
CEEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCEEECCCCCHHHHHHHHHHH
KLKQLFDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGSAIFGERDYGVKDTTSN
HHHHHHHHHHHHCCCHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TTIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPMEDIIAAYNAGQRCFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHH
EGVTKIEALKATHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLA
HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLKVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLRGLMAIPSATNDIAQQTDELS
CEEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCEEECCCCCHHHHHHHHHHH
KLKQLFDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGSAIFGERDYGVKDTTSN
HHHHHHHHHHHHCCCHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]